# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	7.77e-11		
2gcxA	75	4.48e-10		
1fx7A	230	0.000339	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2dtr	226	0.003821		
1bi0	226	0.01907		
2qq9A	226	0.02020		
2dtrA	226	0.03251	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.06474		
1va0A	239	3.889	c.90.1.1	119899
1bymA	97	5.180	b.34.1.2	24458
1pjzA	203	6.834	c.66.1.36	94794
2c81A	418	8.186		
3bn1A	373	14.51		
1o69A	394	17.84	c.67.1.4	92560
1r9cA	139	21.67	d.32.1.2	97255
2b4uA	335	24.83		
1jeiA	53	34.20	a.140.1.1	62918
1q2kA	31	34.47	g.3.7.2	95630
1b9hA	388	36.47	c.67.1.4	34488
1mdoA	393	36.61	c.67.1.4	79013
1h9fA	57	36.63	a.140.1.1	60826
2ogeA	399	37.84		
2bwjA	199	42.05		
1gjjA	168	44.20	a.140.1.1,a.140.1.1	83291,83292
1pjqA	457	45.61	c.2.1.11,c.90.1.1,e.37.1.1	94766,94767,94768
2ooiA	162	46.59		
1xw3A	110	46.74		
1eejA	216	47.44	c.47.1.9,d.17.3.1	33057,38071
1e0cA	271	51.86	c.46.1.2,c.46.1.2	32717,32718
1cj3A	392	52.61	c.3.1.2,d.16.1.2	30347,37878
1zylA	328	54.86		
1m6nA	802	56.55	a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19	78697,78698,78699,78700
1y8xB	98	59.81		
1opd	85	61.61		
1pch	88	64.17		
1v95A	130	66.88	c.51.1.1	108435
2rccA	346	68.36		
1gutA	68	69.23	b.40.6.1	65576
3dhzA	329	70.43		
1wc2A	181	70.80		
1a7aA	432	73.13	c.2.1.4,c.23.12.3	30104,31364
1vekA	84	76.96	a.5.2.1	113636
3bhdA	234	77.35		
1z3eB	73	77.40	a.60.3.1	124401
2aznA	219	78.25	c.71.1.2	127608
1cbfA	285	78.38	c.90.1.1	35587
1lf2A	331	79.88	b.50.1.2	77914
1pchA	88	80.62	d.94.1.1	40564
1d1gA	168	80.98	c.71.1.1	34889
1ktbA	405	81.55	b.71.1.1,c.1.8.1	72960,72961
2dsjA	423	83.93		
1q0uA	219	85.41	c.37.1.19	95512
1mveA	243	87.30	b.29.1.2	85140
1xdnA	277	88.33	d.142.2.4	115168
1opdA	85	89.03	d.94.1.1	40560