# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	2.16e-10		
2gcxA	75	1.21e-09		
1fx7A	230	0.000760	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2dtr	226	0.005164		
2qq9A	226	0.02044		
1bi0	226	0.03116		
2dtrA	226	0.04489	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.1046		
1va0A	239	5.800	c.90.1.1	119899
1pjzA	203	8.049	c.66.1.36	94794
2c81A	418	10.87		
1bymA	97	11.10	b.34.1.2	24458
3bn1A	373	19.24		
1r9cA	139	24.04	d.32.1.2	97255
1o69A	394	25.85	c.67.1.4	92560
1h9fA	57	32.28	a.140.1.1	60826
1jeiA	53	32.76	a.140.1.1	62918
1q2kA	31	36.19	g.3.7.2	95630
1gjjA	168	38.11	a.140.1.1,a.140.1.1	83291,83292
1mdoA	393	40.18	c.67.1.4	79013
1b9hA	388	44.07	c.67.1.4	34488
1xw3A	110	45.72		
1ktbA	405	47.02	b.71.1.1,c.1.8.1	72960,72961
2ooiA	162	47.19		
2ogeA	399	53.34		
1pjqA	457	53.89	c.2.1.11,c.90.1.1,e.37.1.1	94766,94767,94768
1a7aA	432	55.67	c.2.1.4,c.23.12.3	30104,31364
2bwjA	199	58.88		
1zylA	328	59.85		
1v95A	130	61.53	c.51.1.1	108435
1y8xB	98	62.12		
1cbfA	285	62.97	c.90.1.1	35587
1m6nA	802	63.41	a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19	78697,78698,78699,78700
1e0cA	271	64.55	c.46.1.2,c.46.1.2	32717,32718
1wc2A	181	64.68		
1opd	85	68.02		
1vekA	84	71.74	a.5.2.1	113636
1pch	88	74.49		
1lbqA	362	76.00	c.92.1.1	77877
2b4uA	335	78.32		
2dsjA	423	78.52		
3bhdA	234	80.38		
3dhzA	329	80.47		
2aznA	219	81.41	c.71.1.2	127608
1lb2B	84	83.50	a.60.3.1	77871
2rccA	346	85.04		
2i1uA	121	85.36