# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	2.33e-10		
2gcxA	75	1.01e-09		
1fx7A	230	0.000869	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2dtr	226	0.003404		
2qq9A	226	0.01230		
1bi0	226	0.02258		
2dtrA	226	0.03902	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.06878		
1va0A	239	4.286	c.90.1.1	119899
1pjzA	203	7.500	c.66.1.36	94794
1bymA	97	8.606	b.34.1.2	24458
2c81A	418	14.99		
1r9cA	139	20.95	d.32.1.2	97255
3bn1A	373	25.99		
1o69A	394	28.82	c.67.1.4	92560
1jeiA	53	29.04	a.140.1.1	62918
1h9fA	57	31.54	a.140.1.1	60826
1q2kA	31	37.03	g.3.7.2	95630
1gjjA	168	40.59	a.140.1.1,a.140.1.1	83291,83292
1ktbA	405	44.27	b.71.1.1,c.1.8.1	72960,72961
1pjqA	457	45.39	c.2.1.11,c.90.1.1,e.37.1.1	94766,94767,94768
2ooiA	162	45.56		
1mdoA	393	51.62	c.67.1.4	79013
2bwjA	199	51.93		
1cbfA	285	53.70	c.90.1.1	35587
1xw3A	110	55.54		
1b9hA	388	56.21	c.67.1.4	34488
1pch	88	56.82		
1opd	85	56.87		
2dsjA	423	57.68		
2ogeA	399	57.69		
1y8xB	98	58.53		
1e0cA	271	58.54	c.46.1.2,c.46.1.2	32717,32718
1zylA	328	58.79		
1v95A	130	62.52	c.51.1.1	108435
1vekA	84	62.98	a.5.2.1	113636
1a7aA	432	63.04	c.2.1.4,c.23.12.3	30104,31364
1cj3A	392	68.54	c.3.1.2,d.16.1.2	30347,37878
1ve2A	235	72.75	c.90.1.1	120008
2b4uA	335	73.17		
1pchA	88	73.66	d.94.1.1	40564
1wc2A	181	74.53		
1m6nA	802	75.44	a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19	78697,78698,78699,78700
2qwvA	208	77.49		
1lbqA	362	79.00	c.92.1.1	77877
1opdA	85	85.36	d.94.1.1	40560
1nvmB	312	87.17	c.2.1.3,d.81.1.1	86251,86252