# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	1.12e-09		
2gcxA	75	2.62e-09		
1fx7A	230	0.02602	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
1bi0	226	0.04971		
1qw1A	121	0.05073		
2dtrA	226	1.118	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
2dtr	226	1.825		
2qq9A	226	2.338		
1bymA	97	2.918	b.34.1.2	24458
1pjzA	203	8.365	c.66.1.36	94794
1vekA	84	9.96	a.5.2.1	113636
1va0A	239	16.67	c.90.1.1	119899
1jeiA	53	19.86	a.140.1.1	62918
1e0cA	271	23.62	c.46.1.2,c.46.1.2	32717,32718
1h9fA	57	26.03	a.140.1.1	60826
3bhdA	234	38.86		
1ktbA	405	41.38	b.71.1.1,c.1.8.1	72960,72961
1cbfA	285	45.65	c.90.1.1	35587
1t3bA	211	47.35	c.47.1.9,d.17.3.1	106341,106342
1z3eB	73	48.11	a.60.3.1	124401
1eejA	216	49.37	c.47.1.9,d.17.3.1	33057,38071
1rhsA	296	49.80	c.46.1.2,c.46.1.2	32703,32704
1dkqA	410	49.96	c.60.1.2	33998
1vg5A	73	50.17	a.5.2.1	113640
1ri5A	298	52.92	c.66.1.34	97502
1r9cA	139	53.39	d.32.1.2	97255
1shfA	59	54.53	b.34.2.1	24462
1cj3A	392	55.95	c.3.1.2,d.16.1.2	30347,37878
1a0nB	69	58.35	b.34.2.1	24469
1pgyA	47	58.57	a.5.2.1	94696
1pch	88	61.09		
1opd	85	64.96		
1avzC	57	67.74	b.34.2.1	24467
3bpdA	100	80.04		
1lb2B	84	80.57	a.60.3.1	77871
1q2kA	31	81.14	g.3.7.2	95630
2j0nA	200	81.73	a.250.1.1	137899
1azgB	67	83.27	b.34.2.1	24471
1y8xB	98	83.79		
1pchA	88	87.21	d.94.1.1	40564