# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	3.01e-10		
2gcxA	75	2.32e-09		
1fx7A	230	0.000800	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2dtr	226	0.004204		
1bi0	226	0.02259		
2qq9A	226	0.02628		
2dtrA	226	0.05089	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.08290		
1va0A	239	4.368	c.90.1.1	119899
1bymA	97	7.031	b.34.1.2	24458
1cbfA	285	10.16	c.90.1.1	35587
1pjzA	203	14.13	c.66.1.36	94794
2c81A	418	16.45		
1o69A	394	17.32	c.67.1.4	92560
1b9hA	388	21.99	c.67.1.4	34488
1r9cA	139	23.49	d.32.1.2	97255
2b4uA	335	24.39		
1eejA	216	27.47	c.47.1.9,d.17.3.1	33057,38071
2ooiA	162	29.38		
3bn1A	373	31.00		
1q2kA	31	31.31	g.3.7.2	95630
1xw3A	110	37.59		
1vekA	84	39.18	a.5.2.1	113636
1h9fA	57	40.79	a.140.1.1	60826
2ogeA	399	42.76		
1gjjA	168	47.39	a.140.1.1,a.140.1.1	83291,83292
1rhsA	296	47.46	c.46.1.2,c.46.1.2	32703,32704
1jeiA	53	47.78	a.140.1.1	62918
2dsjA	423	47.97		
1lf2A	331	49.23	b.50.1.2	77914
1pjqA	457	51.16	c.2.1.11,c.90.1.1,e.37.1.1	94766,94767,94768
1pswA	348	53.11	c.87.1.7	88287
1e0cA	271	57.03	c.46.1.2,c.46.1.2	32717,32718
1lb2B	84	57.08	a.60.3.1	77871
1x8mA	288	62.47	b.82.1.13	109516
2p19A	149	63.34		
2pkeA	251	65.88		
2vluA	122	68.00		
2j0nA	200	68.68	a.250.1.1	137899
2bwjA	199	69.89		
1v95A	130	70.60	c.51.1.1	108435
1m6nA	802	71.21	a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19	78697,78698,78699,78700
1mdoA	393	72.52	c.67.1.4	79013
3dhzA	329	73.05		
1opd	85	73.27		
1fwkA	296	73.73	d.14.1.5,d.58.26.1	37576,39398
2oggA	152	79.22		
2rccA	346	81.50		
1qmgA	524	82.35	a.100.1.2,c.2.1.6	18785,30182
2ikkA	173	82.78		
3cnvA	162	82.88		
1wohA	305	83.69	c.42.1.1	109446
1z3eB	73	87.20	a.60.3.1	124401