# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 1.59e-13 2gcxA 75 2.28e-12 1fx7A 230 6.66e-05 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2dtr 226 9.70e-05 2dtrA 226 0.01163 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1qw1A 121 0.01537 1bi0 226 0.03801 2qq9A 226 0.2278 1eejA 216 0.7798 c.47.1.9,d.17.3.1 33057,38071 1zy9A 564 2.529 b.30.5.11,c.1.8.13 125813,125814 1bymA 97 2.698 b.34.1.2 24458 2rebA 352 4.235 c.37.1.11,d.48.1.1 32282,38767 1zzmA 259 6.657 c.1.9.12 125911 1t1iA 364 6.845 c.41.1.2 106248 1hg8A 349 7.622 b.80.1.3 65830 1b9mA 265 8.303 a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 1u0tA 307 8.402 e.52.1.1 107567 1r9cA 139 9.102 d.32.1.2 97255 2qedA 258 10.23 2dsjA 423 11.05 2z8rA 591 12.63 1va0A 239 12.74 c.90.1.1 119899 2c1vA 338 13.86 1amoA 615 14.92 b.43.4.1,c.23.5.2,c.25.1.4 25669,31210,31557 1a53 247 17.36 2raqA 97 17.56 2qwxA 231 17.86 1lbqA 362 18.22 c.92.1.1 77877 2olnA 397 19.05 1rhsA 296 19.91 c.46.1.2,c.46.1.2 32703,32704 2h88A 621 20.14 2qwvA 208 20.62 1aqkH 226 22.11 b.1.1.1,b.1.1.2 20193,21209 1t1gA 364 22.98 c.41.1.2 106246 1lycA 343 23.46 a.93.1.1 74344 2pkeA 251 23.98 2rk0A 136 24.70 1mpyA 307 24.70 d.32.1.3,d.32.1.3 38508,38509 1v73A 342 25.14 1zylA 328 25.83 2jmwA 86 26.92 2ooiA 162 27.99 2isnA 364 29.10 1f46A 140 29.30 d.129.4.1 59643 2fa1A 160 29.96 d.190.1.2 133182 2epgA 487 30.50 2dc1A 236 30.85 3bq5A 766 32.40 2nq5A 755 32.89 2ywwA 149 33.60 2zfdA 226 33.78 1jeiA 53 35.97 a.140.1.1 62918 1jk0A 419 36.21 a.25.1.2 63142 1nf5B 286 37.28 c.68.1.2 80454 1ga1A 372 37.38 c.41.1.2 32557 1fsuA 492 38.36 c.76.1.2 35032 1h9fA 57 38.69 a.140.1.1 60826 2pii 112 38.80 1aukA 489 40.70 c.76.1.2 35030 2ogeA 399 42.24 2c9hA 444 43.05 1wrbA 253 45.27 c.37.1.19 121192 2gmwA 211 46.06 1wdeA 294 46.81 c.90.1.1 114534 1p57A 114 46.93 d.170.1.2 94125 2basA 431 47.28 c.1.33.1,d.110.6.2 128244,128245 1q2kA 31 47.63 g.3.7.2 95630 1bqg 451 47.94 2pgfA 371 48.12 1ub0A 258 48.73 c.72.1.2 88394 1csjA 531 51.57 e.8.1.4 43120 1xw3A 110 52.60 2p19A 149 52.97 1plqA 258 53.05 d.131.1.2,d.131.1.2 41388,41389 1jb0A 755 53.09 f.29.1.1 62820 2ikkA 173 53.67 2jhmF 218 54.71 1y8tA 324 55.41 b.36.1.4,b.47.1.1 122763,122764 2d39A 237 55.65 1rhs 296 55.98 2q4zA 312 56.16 1vekA 84 56.81 a.5.2.1 113636 2dnjA 260 56.99 d.151.1.1 41790 3borA 237 57.80 1x3lA 440 58.29 1dypA 271 59.68 b.29.1.2 24185 1ddgA 374 59.96 b.43.4.1,c.25.1.4 25671,31559 1d2mA 665 62.76 c.37.1.19,c.37.1.19 32417,32418 3bhdA 234 63.21 2rccA 346 64.05 1ve2A 235 66.97 c.90.1.1 120008 1wc2A 181 66.99 1z3eB 73 67.38 a.60.3.1 124401 2i1uA 121 67.52 1cfpA 92 67.74 a.39.1.2 17172 2i44A 324 68.87 1jroA 462 68.89 a.56.1.1,d.15.4.2,d.87.2.1,d.145.1.3 67137,67138,67139,67140 1j5qA 437 69.33 b.121.2.3,b.121.2.3 77084,77085 2o55A 258 69.40 3cnvA 162 73.84 1t7lA 766 74.28 1dbyA 107 75.72 c.47.1.1 32734 1b7yB 785 75.85 a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,b.153.1.1 16301,16302,25312,39311,40780,41456 1uby 367 76.08 2dt4A 143 76.62 1aijH 260 76.64 b.41.1.1,f.23.10.1 25466,43463 1fwkA 296 77.36 d.14.1.5,d.58.26.1 37576,39398 1czaN 917 81.67 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 1kwiA 101 82.03 d.17.1.3 77564 2z0xA 158 82.66 1mi4A 427 84.41 d.68.2.2 79141 1mvwC 147 84.52 i.15.1.1 79525 1wxxA 382 85.16 b.122.1.9,c.66.1.51 121418,121419 1lb2B 84 85.17 a.60.3.1 77871 1ky9A 448 85.26 b.36.1.4,b.47.1.1 73198,73199 2z9iA 324 86.22 2r0cA 549 87.39 1nscA 390 87.97 b.68.1.1 27591 2ekdA 207 88.67 2dexX 671 88.86 b.2.9.1,b.6.1.6,d.126.1.5 131436,131437,131438 2pkhA 148 89.10 1nswA 105 89.45 c.47.1.1 92097 1k9uA 78 89.54 a.39.1.10 84348