# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	7.79e-11		
2gcxA	75	6.19e-10		
1fx7A	230	0.000439	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2dtr	226	0.002808		
1bi0	226	0.01494		
2qq9A	226	0.01895		
2dtrA	226	0.02579	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.05530		
1va0A	239	3.207	c.90.1.1	119899
1bymA	97	5.222	b.34.1.2	24458
1pjzA	203	9.354	c.66.1.36	94794
1cbfA	285	9.678	c.90.1.1	35587
1r9cA	139	11.10	d.32.1.2	97255
2c81A	418	23.01		
2ooiA	162	24.10		
1o69A	394	26.21	c.67.1.4	92560
1q2kA	31	26.83	g.3.7.2	95630
1h9fA	57	27.89	a.140.1.1	60826
1pjqA	457	30.64	c.2.1.11,c.90.1.1,e.37.1.1	94766,94767,94768
1jeiA	53	30.70	a.140.1.1	62918
1gjjA	168	31.38	a.140.1.1,a.140.1.1	83291,83292
1b9hA	388	32.65	c.67.1.4	34488
2j0nA	200	34.63	a.250.1.1	137899
1vekA	84	39.84	a.5.2.1	113636
2bwjA	199	43.66		
3bn1A	373	44.56		
1wc2A	181	47.43		
2b4uA	335	48.51		
1eejA	216	52.48	c.47.1.9,d.17.3.1	33057,38071
1xw3A	110	53.28		
1opd	85	53.75		
2qwvA	208	56.24		
1m6nA	802	58.43	a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19	78697,78698,78699,78700
1e0cA	271	59.41	c.46.1.2,c.46.1.2	32717,32718
3bhdA	234	61.92		
2dsjA	423	63.13		
2ogeA	399	63.93		
1pswA	348	64.33	c.87.1.7	88287
2vluA	122	64.39		
1ve2A	235	64.69	c.90.1.1	120008
1lf2A	331	68.88	b.50.1.2	77914
2dc4A	165	69.00		
1x8mA	288	73.29	b.82.1.13	109516
1lb2B	84	73.72	a.60.3.1	77871
1v95A	130	74.12	c.51.1.1	108435
3dhzA	329	75.18		
2oolA	337	77.35		
2p19A	149	79.16		
1qmgA	524	80.71	a.100.1.2,c.2.1.6	18785,30182
1rhsA	296	80.77	c.46.1.2,c.46.1.2	32703,32704
2ikkA	173	81.71		
3bwgA	239	82.93		
2pkhA	148	84.97		
1a7aA	432	85.18	c.2.1.4,c.23.12.3	30104,31364
2i1uA	121	85.74		
1opdA	85	86.19	d.94.1.1	40560
2vm1A	118	87.40		
1zylA	328	89.57		
2ebiA	86	89.63