# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	1.08e-10		
2gcxA	75	3.14e-10		
1fx7A	230	0.000355	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2dtr	226	0.008635		
2qq9A	226	0.01668		
1bi0	226	0.01866		
2dtrA	226	0.02327	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.03361		
1bymA	97	4.105	b.34.1.2	24458
1pjzA	203	4.533	c.66.1.36	94794
1va0A	239	7.325	c.90.1.1	119899
2c81A	418	9.939		
1h9fA	57	13.63	a.140.1.1	60826
1vekA	84	16.49	a.5.2.1	113636
1r9cA	139	18.16	d.32.1.2	97255
1y8xB	98	20.00		
3bn1A	373	21.58		
1o69A	394	26.45	c.67.1.4	92560
1b9hA	388	30.76	c.67.1.4	34488
1jeiA	53	30.79	a.140.1.1	62918
1opd	85	32.82		
1gjjA	168	33.08	a.140.1.1,a.140.1.1	83291,83292
1q2kA	31	36.80	g.3.7.2	95630
1pch	88	40.41		
2dsjA	423	40.71		
1xw3A	110	42.16		
2j0nA	200	42.73	a.250.1.1	137899
2ogeA	399	44.45		
1mdoA	393	45.25	c.67.1.4	79013
1v95A	130	49.36	c.51.1.1	108435
1gutA	68	51.56	b.40.6.1	65576
1pchA	88	52.50	d.94.1.1	40564
1x8mA	288	53.19	b.82.1.13	109516
1pjqA	457	53.75	c.2.1.11,c.90.1.1,e.37.1.1	94766,94767,94768
1z3eB	73	54.87	a.60.3.1	124401
1r1gA	31	57.67	g.3.7.2	96816
2ooiA	162	57.67		
1lb2B	84	61.22	a.60.3.1	77871
1opdA	85	61.67	d.94.1.1	40560
1ptfA	88	63.48	d.94.1.1	40549
1e0cA	271	63.69	c.46.1.2,c.46.1.2	32717,32718
1ptf	88	66.17		
2rccA	346	71.38		
1fwkA	296	72.04	d.14.1.5,d.58.26.1	37576,39398
1fr3A	67	81.14	b.40.6.1	25436
2hdeA	148	84.51		
2nygA	273	85.29		
1cbfA	285	86.63	c.90.1.1	35587
2qh8A	302	88.59		
3dhzA	329	89.06