# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	3.26e-10		
2gcxA	75	9.89e-10		
1fx7A	230	0.001040	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2dtr	226	0.003164		
1bi0	226	0.01619		
2dtrA	226	0.03353	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
2qq9A	226	0.03500		
1qw1A	121	0.04274		
1pjzA	203	5.459	c.66.1.36	94794
1va0A	239	6.610	c.90.1.1	119899
1bymA	97	7.185	b.34.1.2	24458
2c81A	418	17.91		
1y8xB	98	20.05		
1r9cA	139	20.92	d.32.1.2	97255
1jeiA	53	21.22	a.140.1.1	62918
1xw3A	110	23.24		
1h9fA	57	26.32	a.140.1.1	60826
3bn1A	373	28.01		
1o69A	394	30.44	c.67.1.4	92560
1opd	85	35.73		
1q2kA	31	37.13	g.3.7.2	95630
1r1gA	31	41.07	g.3.7.2	96816
1cbfA	285	42.18	c.90.1.1	35587
1pjqA	457	46.55	c.2.1.11,c.90.1.1,e.37.1.1	94766,94767,94768
1e0cA	271	48.59	c.46.1.2,c.46.1.2	32717,32718
1pch	88	51.47		
1ktbA	405	56.03	b.71.1.1,c.1.8.1	72960,72961
2b4uA	335	56.20		
1b9hA	388	56.43	c.67.1.4	34488
1wc2A	181	57.17		
1zylA	328	57.46		
2qwvA	208	58.29		
1vekA	84	60.66	a.5.2.1	113636
2dc4A	165	63.35		
2ooiA	162	63.62		
2j0nA	200	64.54	a.250.1.1	137899
2dsjA	423	65.36		
1gjjA	168	66.27	a.140.1.1,a.140.1.1	83291,83292
1pchA	88	67.11	d.94.1.1	40564
1opdA	85	70.85	d.94.1.1	40560
1v95A	130	71.08	c.51.1.1	108435
2nygA	273	72.41		
2ogeA	399	72.88		
1mdoA	393	75.11	c.67.1.4	79013
2bw3B	84	75.35	a.270.1.1	129319
2hdeA	148	76.39		
1cj3A	392	76.96	c.3.1.2,d.16.1.2	30347,37878
1ve2A	235	80.12	c.90.1.1	120008
1lf2A	331	80.58	b.50.1.2	77914
1z3eB	73	81.32	a.60.3.1	124401
1lbqA	362	81.69	c.92.1.1	77877
1x8mA	288	82.01	b.82.1.13	109516
2oggA	152	83.43		
1gutA	68	83.45	b.40.6.1	65576
2f4lA	297	84.91	b.23.3.1	132927
1yfbA	59	85.83	b.129.1.3	123057
2ebiA	86	87.54		
2p19A	149	87.74		
3cnvA	162	89.08		
1nkrA	201	89.46	b.1.1.4,b.1.1.4	21799,21800