# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gcxA 75 2.55e-05 2h3jA 75 6.11e-05 1fx7A 230 0.02884 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1bi0 226 0.4595 3c0cA 73 1.832 2g6fX 59 2.182 1aboA 62 2.274 b.34.2.1 24474 1dj7B 75 3.460 b.34.4.3 24598 1gcqA 61 3.900 b.34.2.1 60434 2a08A 60 4.337 1tuc 63 4.840 2ak5A 64 4.919 1eejA 216 5.143 c.47.1.9,d.17.3.1 33057,38071 1bbzA 58 5.459 b.34.2.1 24477 2j6fA 62 5.617 1w70A 60 5.766 1wyxA 69 5.790 1zx6A 58 5.817 1zlmA 58 6.234 1pht 85 6.365 1hd3A 62 6.418 b.34.2.1 65802 1phtA 85 7.128 b.34.2.1 24483 2drmA 58 8.202 1ootA 60 8.302 b.34.2.1 93386 1u06A 62 8.333 b.34.2.1 119404 1utiA 58 9.332 b.34.2.1 99962 1oebA 62 10.72 b.34.2.1 86909 1bymA 97 11.06 b.34.1.2 24458 2d1xA 66 11.41 1semA 58 11.80 b.34.2.1 24544 2o88A 58 12.20 2a28A 54 12.25 2gncA 60 13.25 2ooiA 162 15.12 2pu9B 74 15.55 2bz8A 58 15.87 1e0cA 271 19.39 c.46.1.2,c.46.1.2 32717,32718 1uarA 285 20.04 c.46.1.2,c.46.1.2 107762,107763 1ov3A 138 20.22 b.34.2.1,b.34.2.1 87451,87452 1qp2A 70 20.36 b.34.4.2 24596 2j05A 65 20.80 1qw1A 121 21.85 2qtxA 71 21.96 2bzyA 67 21.96 1gcpA 70 22.96 b.34.2.1 60430 1j48A 110 23.66 b.1.7.1 84112 1kzlA 208 24.11 b.43.4.3,b.43.4.3 77635,77636 1z9zA 60 25.52 1jegA 83 26.15 b.34.2.1 66610 1cbfA 285 27.21 c.90.1.1 35587 2v1qA 60 27.96 1h75A 81 28.89 c.47.1.1 60716 1ng2A 193 29.00 b.34.2.1,b.34.2.1 85660,85661 2o31A 67 29.95 1va0A 239 31.05 c.90.1.1 119899 1wosA 364 31.78 b.44.2.1,d.250.1.1 109468,109469 1dcjA 81 32.13 d.68.3.3 59115 1jb0E 75 33.28 b.34.4.2 62824 2elfA 370 34.10 2mcm 112 35.37 2jngA 105 35.39 1q7sA 117 42.39 c.131.1.1 96055 1efnA 59 42.64 b.34.2.1 24465 1noaA 113 43.17 b.1.7.1 22208 1qcsA 211 43.72 b.52.2.3,d.31.1.1 26927,38461 1wlpB 138 43.74 b.34.2.1 121010 3cp0A 82 43.74 2p19A 149 44.50 3ddyA 186 44.65 2qk0A 74 45.17 3cnvA 162 45.24 1pjqA 457 45.49 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1rhsA 296 45.79 c.46.1.2,c.46.1.2 32703,32704 2oggA 152 45.84 1uj0A 62 46.55 b.34.2.1 99449 1v7lA 163 47.52 c.8.2.1 113562 2ostA 151 47.55 1wu2A 396 47.64 b.85.6.1,b.103.1.1,c.57.1.2 114884,114885,114886 1yn8A 59 48.10 1griA 217 50.50 b.34.2.1,b.34.2.1,d.93.1.1 24531,24532,40473 1azgB 67 51.41 b.34.2.1 24471 2o9sA 67 52.99 1nxzA 246 53.41 b.122.1.2,c.116.1.5 86391,86392 1hf2A 210 54.17 b.80.3.1,c.102.1.1 60992,60993 3cqtA 79 55.55 2heqA 84 55.95 1ug1A 92 56.13 b.34.2.1 99360 2mcmA 112 58.41 b.1.7.1 22207 1bkb 136 58.89 2ikkA 173 59.00 1bkbA 136 59.08 b.34.5.2,b.40.4.5 24609,25341 1ckaA 57 59.43 b.34.2.1 24459 3bpuA 88 60.28 3vub 101 61.10 2egvA 229 62.88 1suuA 312 63.21 b.68.10.1 99006 2fa1A 160 63.50 d.190.1.2 133182 2b2nA 344 64.21 c.37.1.19 127710 2pp6A 102 65.47 1wn2A 121 65.89 1ywpA 64 66.14 2ggrA 76 66.27 1t2wA 145 67.43 b.100.1.1 106289 1cmbA 104 67.50 a.43.1.5 17460 2iimA 62 68.05 b.34.2.1 137434 2nxcA 254 68.33 c.66.1.39 138739 2de0X 526 69.08 1i9yA 347 71.00 d.151.1.2 62101 2nysA 176 71.37 1ar0A 127 72.12 d.17.4.2 38092 1ktbA 405 72.29 b.71.1.1,c.1.8.1 72960,72961 1x2kA 68 72.42 1pytA 94 72.71 d.58.3.1 39064 2f5kA 102 73.42 b.34.13.3 132995 2dtr 226 73.57 1b07A 59 74.88 b.34.2.1 24461 1vg5A 73 75.81 a.5.2.1 113640 1i9zA 347 79.37 d.151.1.2 62102 1bu1A 57 81.82 b.34.2.1 24499 1gcqC 70 82.38 b.34.2.1 60436 1ruwA 69 83.37 1jbwA 428 84.33 c.59.1.2,c.72.2.2 62860,62861 1ycyA 71 85.21 b.38.1.4 122970 1yleA 342 85.91 d.108.1.8 123647 1i8dA 213 87.06 b.43.4.3,b.43.4.3 61953,61954 1jb2A 127 89.56 d.17.4.2 71624 1t1vA 93 89.74 c.47.1.14 106278 1a62 130 89.79