Best Alignments for TR462

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2h3jA	1.4378e-10	2h3jA/TR462-2h3jA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2gcxA	2.7141e-10	2gcxA/TR462-2gcxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1qw1A	6.6764e-04	1qw1A/TR462-1qw1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1fx7A	3.3001e-03	1fx7A/TR462-1fx7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.5.24 a.76.1.1 b.34.1.2
2dtrA	4.8636e-03	2dtrA/TR462-2dtrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.5.24 a.76.1.1 b.34.1.2
2qq9A	3.3997e-02	2qq9A/TR462-2qq9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1rhsA	1.4156e+01	1rhsA/TR462-1rhsA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.2 c.46.1.2
1rhs	1.6602e+01	1rhs/TR462-1rhs-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1y8xB	1.7637e+01	1y8xB/TR462-1y8xB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1j48A	1.9631e+01	1j48A/TR462-1j48A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.1.7.1
1uarA	2.2678e+01	1uarA/TR462-1uarA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.2 c.46.1.2
1ri5A	2.4882e+01	1ri5A/TR462-1ri5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.66.1.34
1vekA	3.0834e+01	1vekA/TR462-1vekA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.5.2.1
1h75A	3.0851e+01	1h75A/TR462-1h75A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.47.1.1
1e0cA	3.8745e+01	1e0cA/TR462-1e0cA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.2 c.46.1.2
1z3eB	5.1277e+01	1z3eB/TR462-1z3eB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.60.3.1
2fa1A	5.4116e+01	2fa1A/TR462-2fa1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.190.1.2
2c81A	5.4626e+01	2c81A/TR462-2c81A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1cbfA	5.5038e+01	1cbfA/TR462-1cbfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.90.1.1
1nrwA	5.8023e+01	1nrwA/TR462-1nrwA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.108.1.10

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001