# TARGET TR462 # Using neural net dunbrack-40pc-3157-t06-IDGaaH13-3-13-7-13-9-13-11-pb-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 16 (1 pb ) # The input amino acid frequencies were determined from # alignment TR462.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 75.2253 # Pos AA A B C D E F G H I J K L M N O P 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.128 0.016 0.299 0.500 0.002 0.010 0.003 0.001 0.003 0.004 0.002 0.004 0.011 0.001 0.001 0.016 2 K 0.014 0.007 0.073 0.101 0.019 0.758 0.002 0.002 0.001 0.002 0.005 0.004 0.011 0.001 0.001 0.001 3 L 0.002 0.070 0.007 0.123 0.014 0.161 0.002 0.019 0.001 0.001 0.574 0.008 0.016 0.003 0.001 0.001 4 S 0.002 0.223 0.012 0.159 0.005 0.013 0.004 0.017 0.037 0.003 0.024 0.470 0.018 0.002 0.008 0.003 5 R 0.037 0.032 0.216 0.255 0.011 0.017 0.027 0.010 0.042 0.005 0.014 0.017 0.129 0.006 0.018 0.164 6 L 0.043 0.011 0.763 0.112 0.008 0.006 0.005 0.003 0.002 0.002 0.003 0.003 0.018 0.001 0.003 0.018 7 V 0.002 0.001 0.004 0.003 0.781 0.015 0.121 0.001 0.001 0.001 0.001 0.001 0.001 0.071 0.001 0.001 8 P 0.001 0.002 0.001 0.003 0.001 0.002 0.001 0.951 0.001 0.001 0.003 0.001 0.001 0.001 0.037 0.001 9 G 0.001 0.007 0.001 0.004 0.001 0.001 0.001 0.001 0.902 0.056 0.001 0.001 0.001 0.001 0.001 0.029 10 V 0.988 0.001 0.003 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 11 P 0.001 0.006 0.948 0.042 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 12 A 0.002 0.006 0.044 0.945 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 R 0.001 0.002 0.024 0.970 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 I 0.001 0.001 0.007 0.394 0.115 0.478 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 15 K 0.001 0.725 0.003 0.224 0.001 0.007 0.001 0.034 0.001 0.001 0.003 0.002 0.001 0.001 0.001 0.001 16 R 0.001 0.007 0.002 0.924 0.003 0.018 0.001 0.003 0.025 0.003 0.010 0.001 0.001 0.001 0.001 0.002 17 L 0.050 0.017 0.577 0.308 0.012 0.009 0.003 0.005 0.001 0.001 0.007 0.004 0.005 0.001 0.001 0.002 18 E 0.005 0.026 0.054 0.495 0.050 0.325 0.002 0.005 0.002 0.009 0.004 0.010 0.008 0.001 0.001 0.003 19 V 0.003 0.022 0.006 0.091 0.569 0.158 0.016 0.012 0.001 0.003 0.094 0.005 0.008 0.012 0.001 0.001 20 S 0.001 0.065 0.003 0.022 0.002 0.275 0.001 0.393 0.005 0.006 0.073 0.097 0.020 0.001 0.036 0.001 21 G 0.002 0.004 0.002 0.005 0.001 0.009 0.001 0.002 0.060 0.076 0.612 0.108 0.096 0.001 0.001 0.022 22 E 0.044 0.002 0.002 0.002 0.001 0.007 0.001 0.001 0.001 0.001 0.041 0.683 0.216 0.001 0.001 0.001 23 L 0.001 0.001 0.005 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.023 0.045 0.917 0.001 0.001 0.001 24 H 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.007 0.032 0.954 0.001 0.001 0.001 25 E 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.008 0.987 0.001 0.001 0.001 26 K 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.007 0.986 0.001 0.001 0.002 27 L 0.001 0.001 0.002 0.001 0.001 0.002 0.016 0.001 0.001 0.001 0.002 0.001 0.950 0.022 0.001 0.003 28 V 0.001 0.003 0.004 0.002 0.001 0.001 0.003 0.002 0.001 0.001 0.002 0.005 0.932 0.003 0.040 0.004 29 G 0.001 0.001 0.001 0.001 0.001 0.001 0.015 0.001 0.001 0.001 0.001 0.001 0.071 0.814 0.003 0.090 30 M 0.014 0.002 0.040 0.003 0.001 0.001 0.020 0.007 0.001 0.001 0.001 0.001 0.059 0.004 0.841 0.008 31 G 0.008 0.005 0.134 0.008 0.001 0.005 0.020 0.001 0.015 0.012 0.003 0.001 0.056 0.004 0.005 0.724 32 F 0.861 0.009 0.043 0.061 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.003 0.006 0.001 0.001 0.008 33 V 0.003 0.002 0.018 0.010 0.772 0.027 0.109 0.001 0.001 0.001 0.001 0.001 0.001 0.055 0.001 0.001 34 P 0.001 0.003 0.001 0.006 0.001 0.006 0.001 0.942 0.001 0.001 0.004 0.001 0.001 0.001 0.035 0.001 35 G 0.001 0.016 0.001 0.010 0.001 0.002 0.001 0.001 0.855 0.100 0.002 0.002 0.001 0.001 0.001 0.011 36 E 0.965 0.008 0.007 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 37 E 0.002 0.002 0.935 0.059 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 38 I 0.003 0.004 0.148 0.842 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 39 E 0.001 0.001 0.007 0.988 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 40 I 0.001 0.002 0.004 0.799 0.035 0.154 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 41 V 0.001 0.156 0.006 0.802 0.007 0.011 0.001 0.012 0.001 0.001 0.003 0.002 0.001 0.001 0.001 0.001 42 Q 0.001 0.012 0.004 0.896 0.010 0.048 0.001 0.008 0.006 0.003 0.009 0.001 0.002 0.001 0.001 0.001 43 V 0.011 0.106 0.161 0.662 0.016 0.012 0.003 0.007 0.003 0.002 0.006 0.003 0.004 0.001 0.001 0.003 44 A 0.007 0.013 0.040 0.361 0.071 0.463 0.003 0.008 0.003 0.010 0.004 0.007 0.007 0.001 0.001 0.001 45 P 0.002 0.022 0.007 0.025 0.670 0.063 0.033 0.010 0.001 0.002 0.126 0.002 0.003 0.035 0.001 0.001 46 L 0.002 0.075 0.002 0.038 0.005 0.015 0.001 0.717 0.009 0.002 0.017 0.037 0.002 0.001 0.076 0.001 47 G 0.004 0.029 0.026 0.035 0.001 0.004 0.002 0.005 0.561 0.114 0.007 0.007 0.006 0.001 0.003 0.197 48 D 0.789 0.026 0.068 0.061 0.001 0.016 0.004 0.001 0.005 0.002 0.002 0.010 0.007 0.001 0.001 0.006 49 P 0.027 0.041 0.689 0.203 0.001 0.018 0.001 0.002 0.001 0.001 0.008 0.002 0.004 0.001 0.001 0.003 50 I 0.006 0.040 0.119 0.819 0.001 0.008 0.001 0.001 0.001 0.001 0.002 0.003 0.001 0.001 0.001 0.001 51 V 0.001 0.002 0.053 0.940 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 52 C 0.001 0.002 0.039 0.948 0.006 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 53 K 0.001 0.001 0.003 0.282 0.688 0.020 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 54 I 0.001 0.010 0.001 0.092 0.597 0.114 0.003 0.174 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 55 G 0.001 0.136 0.001 0.081 0.007 0.032 0.001 0.434 0.146 0.103 0.044 0.004 0.001 0.001 0.005 0.004 56 N 0.179 0.085 0.015 0.138 0.001 0.023 0.001 0.013 0.396 0.066 0.020 0.040 0.003 0.001 0.003 0.017 57 R 0.298 0.102 0.455 0.075 0.001 0.016 0.001 0.001 0.007 0.003 0.007 0.022 0.004 0.001 0.001 0.007 58 N 0.022 0.014 0.417 0.443 0.001 0.054 0.001 0.002 0.001 0.001 0.031 0.007 0.007 0.001 0.001 0.001 59 I 0.005 0.040 0.185 0.677 0.003 0.029 0.001 0.002 0.001 0.001 0.023 0.012 0.023 0.001 0.001 0.001 60 T 0.001 0.009 0.016 0.942 0.007 0.010 0.001 0.001 0.001 0.001 0.003 0.002 0.008 0.001 0.001 0.001 61 L 0.002 0.021 0.040 0.837 0.016 0.052 0.002 0.004 0.001 0.001 0.001 0.003 0.019 0.001 0.001 0.001 62 R 0.001 0.017 0.007 0.098 0.021 0.779 0.002 0.016 0.002 0.008 0.023 0.003 0.021 0.001 0.001 0.002 63 K 0.006 0.029 0.003 0.027 0.007 0.141 0.002 0.019 0.004 0.003 0.709 0.022 0.024 0.002 0.001 0.001 64 R 0.004 0.165 0.011 0.033 0.001 0.017 0.002 0.012 0.005 0.002 0.077 0.601 0.057 0.001 0.011 0.003 65 E 0.015 0.022 0.030 0.017 0.008 0.027 0.027 0.003 0.013 0.002 0.027 0.077 0.536 0.033 0.012 0.150 66 A 0.018 0.006 0.109 0.011 0.002 0.075 0.060 0.010 0.001 0.001 0.050 0.027 0.567 0.024 0.026 0.012 67 D 0.005 0.534 0.098 0.053 0.001 0.006 0.010 0.008 0.008 0.002 0.004 0.037 0.118 0.002 0.060 0.055 68 L 0.100 0.012 0.122 0.305 0.001 0.003 0.003 0.001 0.024 0.001 0.003 0.001 0.044 0.006 0.004 0.372 69 I 0.013 0.002 0.954 0.026 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 70 E 0.002 0.027 0.196 0.761 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 71 V 0.001 0.003 0.015 0.975 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 72 E 0.001 0.008 0.043 0.926 0.009 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 73 V 0.001 0.003 0.002 0.186 0.585 0.214 0.004 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 74 V 0.001 0.265 0.004 0.173 0.067 0.059 0.002 0.363 0.002 0.001 0.053 0.004 0.001 0.001 0.004 0.001 75 G 0.002 0.107 0.008 0.136 0.032 0.072 0.006 0.061 0.302 0.167 0.029 0.054 0.004 0.002 0.004 0.013