# List of top-scoring protein chains for TR462.t06-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	7.83e-05		
2gcxA	75	0.000192		
1fx7A	230	6.577	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qsfX	171	36.97		
1y8xB	98	39.34		
2ekkA	47	43.05		
2o96A	178	45.64		
1qvpA	87	52.33	b.34.1.2	111659
2hjhA	354	53.68		
2o95A	187	55.50		
2daiA	83	63.00		
1bymA	97	67.20	b.34.1.2	24458
1e0cA	271	67.94	c.46.1.2,c.46.1.2	32717,32718
1wxvA	92	70.57	d.15.1.1	121409
3bpjA	80	71.74		
2z83A	459	78.69		
1xahA	354	82.45