# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	7.31e-11		
2gcxA	75	2.03e-10		
1fx7A	230	0.000431	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
1qw1A	121	0.000507		
2dtrA	226	0.000881	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
2qq9A	226	0.005143		
1rhsA	296	6.590	c.46.1.2,c.46.1.2	32703,32704
1rhs	296	6.969		
1cbfA	285	9.98	c.90.1.1	35587
1va0A	239	13.78	c.90.1.1	119899
1j48A	110	13.83	b.1.7.1	84112
2fa1A	160	14.09	d.190.1.2	133182
1ri5A	298	14.17	c.66.1.34	97502
1ve2A	235	15.19	c.90.1.1	120008
2ikkA	173	17.20		
2p19A	149	18.89		
1uarA	285	19.99	c.46.1.2,c.46.1.2	107762,107763
1vekA	84	20.21	a.5.2.1	113636
2egxA	269	20.32		
2f4lA	297	21.98	b.23.3.1	132927
2bb3A	221	22.00	c.90.1.1	128257
2c81A	418	22.57		
2oggA	152	22.71		
1h75A	81	24.31	c.47.1.1	60716
1e0cA	271	24.54	c.46.1.2,c.46.1.2	32717,32718
1zc1A	208	24.89		
2d1hA	109	24.99	a.4.5.50	131125
3cnvA	162	27.13		
2j85A	122	27.46	d.321.1.1	138133
1y8xB	98	29.85		
1o69A	394	30.48	c.67.1.4	92560
2v3mA	131	33.10		
1z3eB	73	34.96	a.60.3.1	124401
1xdnA	277	35.64	d.142.2.4	115168
1nrwA	288	36.29	c.108.1.10	86128
2ccqA	99	37.14	d.314.1.1	130252
2py6A	409	40.80		
1kpgA	287	43.48	c.66.1.18	68735
1opdA	85	44.54	d.94.1.1	40560
1pchA	88	45.02	d.94.1.1	40564
2ooiA	162	45.17		
1z6nA	167	47.36	c.47.1.1	124530
1r1gA	31	49.55	g.3.7.2	96816
1l3iA	192	50.76	c.66.1.22	77676
1gsjA	258	51.33	c.73.1.2	70397
3bwgA	239	51.88		
2bl9A	238	53.25		
2ob3A	330	53.96		
2fjtA	182	56.19		
2pieA	138	57.45		
3bmvA	683	57.52		
2p4gA	270	58.20		
2nygA	273	58.40		
1f46A	140	59.87	d.129.4.1	59643
2zgwA	235	60.71		
1nf2A	268	62.07	c.108.1.10	91849
1ptfA	88	62.25	d.94.1.1	40549
1zccA	248	65.01	c.1.18.3	124903
1dv0A	47	66.33	a.5.2.1	16289
1ym5A	300	68.03		
2pkhA	148	69.20		
2nwiA	172	71.98		
1q0uA	219	72.53	c.37.1.19	95512
2gxqA	207	74.06		
2qwvA	208	74.18		
1vg5A	73	74.46	a.5.2.1	113640
2qpqA	301	74.50		
2eayA	233	75.53		
2h1rA	299	76.83		
2dekA	265	77.52	c.90.1.1	131430
2jmwA	86	78.98		
1ee4A	423	80.20	a.118.1.1	19128
2fziA	206	80.97	c.71.1.1	134448
2aotA	292	88.30	c.66.1.19	127098