# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	2.46e-10		
2gcxA	75	8.10e-10		
1fx7A	230	0.000549	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2dtrA	226	0.000947	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.001414		
2qq9A	226	0.01382		
1rhs	296	7.984		
1rhsA	296	8.201	c.46.1.2,c.46.1.2	32703,32704
1j48A	110	8.910	b.1.7.1	84112
1uarA	285	11.64	c.46.1.2,c.46.1.2	107762,107763
1h75A	81	17.33	c.47.1.1	60716
1y8xB	98	18.48		
1cbfA	285	19.74	c.90.1.1	35587
1e0cA	271	22.25	c.46.1.2,c.46.1.2	32717,32718
1ve2A	235	24.15	c.90.1.1	120008
2f4lA	297	24.31	b.23.3.1	132927
1ri5A	298	29.29	c.66.1.34	97502
1vekA	84	29.54	a.5.2.1	113636
1zc1A	208	30.92		
2ikkA	173	31.56		
1va0A	239	32.43	c.90.1.1	119899
2py6A	409	33.27		
2c81A	418	33.32		
2fa1A	160	33.81	d.190.1.2	133182
2p19A	149	34.15		
2v3mA	131	34.27		
1zccA	248	36.05	c.1.18.3	124903
2oggA	152	36.48		
1xdnA	277	37.76	d.142.2.4	115168
1opdA	85	39.36	d.94.1.1	40560
3cnvA	162	42.87		
1z6nA	167	43.75	c.47.1.1	124530
1r1gA	31	46.39	g.3.7.2	96816
2dekA	265	47.37	c.90.1.1	131430
1fqtA	112	51.62	b.33.1.1	24441
1i8dA	213	53.26	b.43.4.3,b.43.4.3	61953,61954
2ooiA	162	54.93		
1ptfA	88	57.07	d.94.1.1	40549
2nygA	273	57.73		
2zgwA	235	59.24		
3bn1A	373	59.80		
1wp5A	323	60.49	b.68.10.1	114780
2bb3A	221	60.51	c.90.1.1	128257
1pchA	88	61.43	d.94.1.1	40564
2d1hA	109	63.61	a.4.5.50	131125
1f46A	140	63.89	d.129.4.1	59643
2egxA	269	64.82		
1z3eB	73	67.22	a.60.3.1	124401
1ufwA	95	67.54	d.58.7.1	99358
1o69A	394	68.73	c.67.1.4	92560
2pkhA	148	70.91		
1vg5A	73	74.12	a.5.2.1	113640
1v95A	130	75.42	c.51.1.1	108435
2uyoA	310	79.15		
1yt8A	539	79.53	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1eejA	216	80.57	c.47.1.9,d.17.3.1	33057,38071
1nrwA	288	83.33	c.108.1.10	86128
1ym5A	300	83.45		
1p9bA	442	83.84	c.37.1.10	94385
2z6rA	265	85.97		
1kzlA	208	89.30	b.43.4.3,b.43.4.3	77635,77636