# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gcxA 75 1.18e-12 2h3jA 75 1.30e-12 1fx7A 230 1.17e-05 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1qw1A 121 4.12e-05 2dtrA 226 0.000269 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2qq9A 226 0.002141 1j48A 110 1.553 b.1.7.1 84112 1zc1A 208 2.487 3bn1A 373 3.527 2c81A 418 3.659 1rhsA 296 3.970 c.46.1.2,c.46.1.2 32703,32704 1uarA 285 4.377 c.46.1.2,c.46.1.2 107762,107763 1o69A 394 4.500 c.67.1.4 92560 1rhs 296 4.667 1y8xB 98 4.790 1opdA 85 5.525 d.94.1.1 40560 2nygA 273 6.188 1vekA 84 6.886 a.5.2.1 113636 1pchA 88 7.333 d.94.1.1 40564 2ogeA 399 8.199 1ptfA 88 9.180 d.94.1.1 40549 2zgwA 235 10.31 2p19A 149 11.24 1h75A 81 11.57 c.47.1.1 60716 1e0cA 271 11.91 c.46.1.2,c.46.1.2 32717,32718 2aotA 292 12.93 c.66.1.19 127098 2egxA 269 13.43 2f4lA 297 13.66 b.23.3.1 132927 2fa1A 160 13.83 d.190.1.2 133182 2eayA 233 16.33 2fjtA 182 17.01 1pch 88 18.29 1nrwA 288 18.49 c.108.1.10 86128 3cnvA 162 19.42 1o6aA 96 19.80 b.139.1.1 92562 1gutA 68 20.85 b.40.6.1 65576 1k0wA 231 20.90 c.74.1.1 77220 1nf2A 268 21.78 c.108.1.10 91849 1tl9A 339 22.99 d.3.1.3 112505 2ikkA 173 23.17 1sphA 88 24.37 d.94.1.1 40544 2ooiA 162 24.61 1fqtA 112 25.44 b.33.1.1 24441 2obfA 289 26.97 1gsjA 258 27.62 c.73.1.2 70397 1vg5A 73 27.71 a.5.2.1 113640 1z3eB 73 30.33 a.60.3.1 124401 1h9mA 145 30.67 b.40.6.2,b.40.6.2 60833,60834 1lvmA 229 31.89 b.47.1.3 78243 2o55A 258 32.22 1eluA 390 32.73 c.67.1.3 34434 1vavA 222 32.73 b.29.1.18 108472 1dv0A 47 33.82 a.5.2.1 16289 1wucA 250 34.04 2okfA 140 34.41 2p4zA 284 35.52 2pieA 138 35.87 2d1hA 109 37.01 a.4.5.50 131125 1v95A 130 37.04 c.51.1.1 108435 1fr3A 67 37.05 b.40.6.1 25436 2v3mA 131 37.21 3bhdA 234 38.15 2qwvA 208 38.97 1qyrA 252 39.18 c.66.1.24 104657 2zbvA 263 39.18 2dx0A 138 40.18 2hdeA 148 40.26 2p3yA 491 40.68 2acaA 189 41.71 d.63.1.2 126545 2ob3A 330 42.07 1ti6A 875 42.34 b.52.2.2,c.81.1.1 106974,106975 2iq1A 274 42.55 1i8dA 213 43.97 b.43.4.3,b.43.4.3 61953,61954 2fssA 365 47.48 2j6iA 364 47.56 1ydgA 211 47.64 c.23.5.8 116614 1el6A 219 48.97 d.182.1.1 42606 2hnfA 133 49.09 1zccA 248 49.82 c.1.18.3 124903 3cq9A 227 51.20 2od0A 105 53.99 2inbA 140 54.11 3d64A 494 56.76 2qtdA 105 57.79 2yzvA 303 57.91 1zetA 388 57.93 d.240.1.1,e.8.1.7 124997,124998 1qp8A 303 58.40 c.2.1.4,c.23.12.1 30092,31352 2cukA 311 58.96 1e4yA 214 59.81 c.37.1.1,g.41.2.1 31901,45181 1z02A 446 59.89 3ch0A 272 59.94 1g8kB 133 60.32 b.33.1.1 24435 1xdnA 277 61.25 d.142.2.4 115168 1widA 130 61.28 b.142.1.2 114667 2bl9A 238 61.65 1z2mA 155 65.06 d.15.1.1,d.15.1.1 124387,124388 2jmwA 86 66.31 2pz0A 252 66.31 1o9yA 84 67.65 b.139.1.1 92692 2a5lA 200 67.98 c.23.5.8 126176 2aouA 292 68.27 c.66.1.19 127100 2oogA 287 68.86 1kzlA 208 69.15 b.43.4.3,b.43.4.3 77635,77636 1ornA 226 69.50 a.96.1.1 87342 1ri5A 298 69.59 c.66.1.34 97502 2if1A 126 70.37 d.64.1.1 39547 2oqaA 241 72.07 2dbqA 334 72.28 2vqeN 61 73.68 2g8jA 339 74.09 d.3.1.3 134773 1s95A 333 74.52 d.159.1.3 105375 2uubN 61 74.57 g.39.1.7 139945 1khbA 625 74.72 c.91.1.1,c.109.1.1 68606,68607 1fjgN 61 75.51 g.39.1.7 45154 1im8A 244 75.69 c.66.1.14 66212 1wwkA 307 77.73 1mr7A 209 78.16 b.81.1.3 91430 1e19A 314 78.96 c.73.1.1 34967 1gdhA 320 78.99 c.2.1.4,c.23.12.1 30095,31355 1vd6A 224 79.74 c.1.18.3 119991 1n28A 124 79.84 a.133.1.2 91550 1l3iA 192 79.95 c.66.1.22 77676 2j85A 122 81.22 d.321.1.1 138133 1pgyA 47 82.25 a.5.2.1 94696 1va0A 239 82.27 c.90.1.1 119899 1opd 85 83.04 2e4qA 109 83.36 1eysH 259 84.45 b.41.1.1,f.23.10.1 25484,43517 1l5xA 280 85.37 c.106.1.1 77718 1yqbA 100 85.70 d.15.1.1 123876 3c0dA 119 86.64 3c0tA 207 86.84 1kpgA 287 86.87 c.66.1.18 68735 2ffiA 288 87.63 c.1.9.15 133385 2eklA 313 88.15 1mx3A 347 89.79 c.2.1.4,c.23.12.1 79638,79639