# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	3.17e-10		
2gcxA	75	1.21e-09		
2dtrA	226	0.001344	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.001766		
1fx7A	230	0.002033	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	0.01104		
1ri5A	298	6.201	c.66.1.34	97502
1o69A	394	9.377	c.67.1.4	92560
2c81A	418	11.75		
2ogeA	399	13.22		
1rhsA	296	13.53	c.46.1.2,c.46.1.2	32703,32704
2gkgA	127	14.47		
1rhs	296	14.80		
1nrwA	288	16.74	c.108.1.10	86128
1h75A	81	23.36	c.47.1.1	60716
2jbaA	127	23.66		
1q0uA	219	24.02	c.37.1.19	95512
1uarA	285	25.73	c.46.1.2,c.46.1.2	107762,107763
2d1hA	109	25.75	a.4.5.50	131125
1va0A	239	26.73	c.90.1.1	119899
1nf2A	268	26.74	c.108.1.10	91849
1e0cA	271	29.03	c.46.1.2,c.46.1.2	32717,32718
1j48A	110	30.03	b.1.7.1	84112
1b00A	127	30.16	c.23.1.1	31122
1vekA	84	32.75	a.5.2.1	113636
2bl9A	238	32.77		
1z3eB	73	35.60	a.60.3.1	124401
1cbfA	285	37.60	c.90.1.1	35587
1kpgA	287	38.07	c.66.1.18	68735
1y8xB	98	38.49		
2v3mA	131	39.21		
1ve2A	235	42.64	c.90.1.1	120008
2aouA	292	42.95	c.66.1.19	127100
2nygA	273	46.32		
1s95A	333	46.34	d.159.1.3	105375
2h1rA	299	48.44		
3bn1A	373	48.52		
2gxqA	207	49.31		
2fjtA	182	49.55		
2aotA	292	50.58	c.66.1.19	127098
2j85A	122	53.47	d.321.1.1	138133
2fa1A	160	55.76	d.190.1.2	133182
2f4lA	297	58.22	b.23.3.1	132927
1xdnA	277	58.26	d.142.2.4	115168
1e4yA	214	58.93	c.37.1.1,g.41.2.1	31901,45181
1nt4A	391	61.27	c.60.1.2	92102
1eluA	390	63.16	c.67.1.3	34434
2qwvA	208	64.52		
1p9bA	442	64.63	c.37.1.10	94385
2pieA	138	64.65		
1z6nA	167	65.66	c.47.1.1	124530
2bb3A	221	65.82	c.90.1.1	128257
1pchA	88	66.51	d.94.1.1	40564
1kmvA	186	70.29	c.71.1.1	72757
2oggA	152	70.40		
1qdeA	224	70.55	c.37.1.19	32410
1opdA	85	70.68	d.94.1.1	40560
1cozA	129	72.13	c.26.1.2	31598
1zc1A	208	73.98		
1v95A	130	74.00	c.51.1.1	108435
2p19A	149	75.32		
2dsjA	423	75.86		
2z26A	347	77.21		
1zccA	248	78.03	c.1.18.3	124903
1fqtA	112	79.11	b.33.1.1	24441
2ccqA	99	80.57	d.314.1.1	130252
2fziA	206	81.73	c.71.1.1	134448
2dejA	350	81.78		
1im8A	244	83.36	c.66.1.14	66212
1vavA	222	85.29	b.29.1.18	108472
2gk6A	624	86.09		
2acaA	189	88.27	d.63.1.2	126545