# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	1.11e-10		
2gcxA	75	6.24e-10		
2dtrA	226	0.000681	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1fx7A	230	0.000716	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
1qw1A	121	0.001042		
2qq9A	226	0.008532		
1rhsA	296	9.592	c.46.1.2,c.46.1.2	32703,32704
1o69A	394	10.39	c.67.1.4	92560
2gkgA	127	11.11		
1ri5A	298	11.48	c.66.1.34	97502
1rhs	296	11.83		
2c81A	418	16.08		
2jbaA	127	17.10		
1q0uA	219	18.21	c.37.1.19	95512
1nrwA	288	18.54	c.108.1.10	86128
1j48A	110	21.27	b.1.7.1	84112
2fa1A	160	22.90	d.190.1.2	133182
1b00A	127	23.03	c.23.1.1	31122
1h75A	81	23.17	c.47.1.1	60716
1cbfA	285	23.18	c.90.1.1	35587
1y8xB	98	23.85		
1uarA	285	25.45	c.46.1.2,c.46.1.2	107762,107763
1va0A	239	25.97	c.90.1.1	119899
1vekA	84	26.57	a.5.2.1	113636
1z3eB	73	27.71	a.60.3.1	124401
1ve2A	235	28.05	c.90.1.1	120008
2ogeA	399	30.06		
1nf2A	268	30.12	c.108.1.10	91849
2d1hA	109	30.63	a.4.5.50	131125
2p19A	149	31.85		
2bb3A	221	32.03	c.90.1.1	128257
2gxqA	207	33.87		
1e0cA	271	35.61	c.46.1.2,c.46.1.2	32717,32718
2pieA	138	37.75		
1pchA	88	37.93	d.94.1.1	40564
2v3mA	131	38.72		
2bl9A	238	38.97		
2oggA	152	41.10		
2j85A	122	42.49	d.321.1.1	138133
2ccqA	99	44.69	d.314.1.1	130252
1opdA	85	45.16	d.94.1.1	40560
1zc1A	208	48.17		
2nygA	273	49.13		
2qwvA	208	49.29		
1z6nA	167	51.09	c.47.1.1	124530
2aotA	292	52.51	c.66.1.19	127098
1xdnA	277	54.86	d.142.2.4	115168
1f46A	140	54.91	d.129.4.1	59643
2egxA	269	54.92		
2f4lA	297	55.59	b.23.3.1	132927
2fjtA	182	55.99		
2ikkA	173	58.89		
2ob3A	330	59.16		
2aouA	292	63.31	c.66.1.19	127100
1kpgA	287	63.77	c.66.1.18	68735
1qdeA	224	66.30	c.37.1.19	32410
1kmvA	186	66.51	c.71.1.1	72757
3bn1A	373	66.88		
2z0jA	237	67.31		
1fqtA	112	69.30	b.33.1.1	24441
3cnvA	162	69.47		
1cozA	129	71.29	c.26.1.2	31598
2qpqA	301	72.61		
3bmvA	683	73.13		
1s95A	333	78.07	d.159.1.3	105375
1nt4A	391	78.26	c.60.1.2	92102
2ooiA	162	78.38		
1mb3A	124	79.00	c.23.1.1	78907
2z26A	347	81.53		
2h1rA	299	83.13		
2pkhA	148	83.15		
1e4yA	214	84.25	c.37.1.1,g.41.2.1	31901,45181
1l3iA	192	89.70	c.66.1.22	77676