# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	1.20e-10		
2gcxA	75	5.86e-10		
2dtrA	226	0.000705	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1fx7A	230	0.000889	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
1qw1A	121	0.001037		
2qq9A	226	0.008583		
1ri5A	298	8.004	c.66.1.34	97502
1rhsA	296	9.559	c.46.1.2,c.46.1.2	32703,32704
1o69A	394	9.716	c.67.1.4	92560
1rhs	296	10.01		
2gkgA	127	10.40		
2c81A	418	13.78		
2ogeA	399	15.61		
2jbaA	127	16.41		
1nrwA	288	16.57	c.108.1.10	86128
1h75A	81	18.46	c.47.1.1	60716
1uarA	285	20.16	c.46.1.2,c.46.1.2	107762,107763
1cbfA	285	22.29	c.90.1.1	35587
1b00A	127	22.50	c.23.1.1	31122
1j48A	110	22.71	b.1.7.1	84112
1y8xB	98	24.09		
1e0cA	271	28.68	c.46.1.2,c.46.1.2	32717,32718
1va0A	239	28.93	c.90.1.1	119899
1q0uA	219	30.01	c.37.1.19	95512
1nf2A	268	30.17	c.108.1.10	91849
1ve2A	235	30.78	c.90.1.1	120008
1z3eB	73	32.51	a.60.3.1	124401
2pieA	138	32.55		
2fa1A	160	33.64	d.190.1.2	133182
2v3mA	131	35.18		
2d1hA	109	37.52	a.4.5.50	131125
2p19A	149	37.88		
1kpgA	287	38.66	c.66.1.18	68735
1vekA	84	39.16	a.5.2.1	113636
1opdA	85	41.22	d.94.1.1	40560
1pchA	88	41.74	d.94.1.1	40564
2bl9A	238	43.66		
2aotA	292	44.42	c.66.1.19	127098
2oggA	152	44.81		
2f4lA	297	47.26	b.23.3.1	132927
2bb3A	221	47.62	c.90.1.1	128257
2j85A	122	48.49	d.321.1.1	138133
1xdnA	277	48.78	d.142.2.4	115168
2nygA	273	48.87		
2qwvA	208	50.04		
2ccqA	99	52.97	d.314.1.1	130252
1mb3A	124	53.00	c.23.1.1	78907
1s95A	333	57.01	d.159.1.3	105375
2aouA	292	57.90	c.66.1.19	127100
2fjtA	182	59.87		
1f46A	140	60.04	d.129.4.1	59643
1zc1A	208	60.64		
2h1rA	299	61.43		
1z6nA	167	63.86	c.47.1.1	124530
3bmvA	683	64.12		
1zccA	248	65.47	c.1.18.3	124903
2dejA	350	66.39		
2gxqA	207	68.00		
2ikkA	173	69.29		
2z0jA	237	69.54		
1qdeA	224	71.36	c.37.1.19	32410
1i3cA	149	73.33	c.23.1.1	71112
3bn1A	373	73.85		
1v95A	130	74.16	c.51.1.1	108435
2z26A	347	74.78		
1eluA	390	75.43	c.67.1.3	34434
1nt4A	391	77.27	c.60.1.2	92102
1kmvA	186	78.08	c.71.1.1	72757
2p4gA	270	84.67		
1cozA	129	84.94	c.26.1.2	31598
1e4yA	214	85.15	c.37.1.1,g.41.2.1	31901,45181
2qpqA	301	86.18		
2ob3A	330	86.23