# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2gcxA	75	6.57e-10		
2h3jA	75	1.16e-09		
1qw1A	121	0.000324		
2dtrA	226	0.02263	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1fx7A	230	0.02265	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	0.1454		
1uarA	285	4.935	c.46.1.2,c.46.1.2	107762,107763
1rhsA	296	5.102	c.46.1.2,c.46.1.2	32703,32704
1rhs	296	5.418		
1vekA	84	7.073	a.5.2.1	113636
1h75A	81	7.605	c.47.1.1	60716
1e0cA	271	15.24	c.46.1.2,c.46.1.2	32717,32718
1dv0A	47	15.98	a.5.2.1	16289
1j48A	110	16.25	b.1.7.1	84112
1ri5A	298	18.36	c.66.1.34	97502
1wwpA	119	18.76		
1pgyA	47	23.65	a.5.2.1	94696
2oqoA	200	23.92		
1z3eB	73	24.11	a.60.3.1	124401
1y8xB	98	24.86		
1phtA	85	24.87	b.34.2.1	24483
3bpdA	100	32.68		
1ptfA	88	44.18	d.94.1.1	40549
2if1A	126	44.80	d.64.1.1	39547
1pht	85	48.18		
3cjpA	272	51.93		
1pchA	88	53.47	d.94.1.1	40564
2hjhA	354	53.99		
1vg5A	73	58.06	a.5.2.1	113640
2qpqA	301	60.02		
2fb1A	226	62.64	a.4.5.68,d.113.1.6	133225,133226
1zccA	248	64.02	c.1.18.3	124903
2jbaA	127	67.78		
1kafA	108	68.00	d.199.1.1	68372
2dklA	85	69.55	a.5.2.1	131555
1opdA	85	70.71	d.94.1.1	40560
2cp8A	54	71.81	a.5.2.1	130695
2f5xA	312	72.29		
1z96A	40	72.90		
1cbfA	285	73.01	c.90.1.1	35587
2gkgA	127	73.02		
1v95A	130	77.93	c.51.1.1	108435
1eejA	216	78.14	c.47.1.9,d.17.3.1	33057,38071
1ee4A	423	78.41	a.118.1.1	19128
2aouA	292	82.27	c.66.1.19	127100
1fr3A	67	83.55	b.40.6.1	25436
2e8oA	103	84.41		
2d1hA	109	84.53	a.4.5.50	131125
3bhdA	234	85.11		
1vdkA	466	88.52	a.127.1.1	100561