# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	2.13e-11		
2gcxA	75	9.81e-11		
1fx7A	230	0.000293	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2dtrA	226	0.000323	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.000717		
2qq9A	226	0.002908		
1rhsA	296	4.226	c.46.1.2,c.46.1.2	32703,32704
1rhs	296	4.392		
1o69A	394	7.646	c.67.1.4	92560
1ri5A	298	8.420	c.66.1.34	97502
2c81A	418	8.492		
1uarA	285	12.25	c.46.1.2,c.46.1.2	107762,107763
1nrwA	288	13.28	c.108.1.10	86128
1e0cA	271	14.80	c.46.1.2,c.46.1.2	32717,32718
1h75A	81	15.11	c.47.1.1	60716
1vekA	84	15.65	a.5.2.1	113636
2aotA	292	18.15	c.66.1.19	127098
1kpgA	287	19.26	c.66.1.18	68735
1cbfA	285	21.93	c.90.1.1	35587
2egxA	269	24.17		
2nygA	273	25.21		
2ogeA	399	25.49		
2d1hA	109	25.61	a.4.5.50	131125
3bn1A	373	26.96		
1nf2A	268	27.04	c.108.1.10	91849
2p19A	149	27.10		
1j48A	110	27.35	b.1.7.1	84112
2ob3A	330	27.63		
2fa1A	160	29.51	d.190.1.2	133182
2v3mA	131	30.35		
1va0A	239	33.59	c.90.1.1	119899
2gkgA	127	33.68		
1z3eB	73	33.85	a.60.3.1	124401
1eluA	390	35.62	c.67.1.3	34434
2j85A	122	36.17	d.321.1.1	138133
1s95A	333	36.20	d.159.1.3	105375
1p9bA	442	37.98	c.37.1.10	94385
1xdnA	277	38.12	d.142.2.4	115168
1zc1A	208	40.00		
2fjtA	182	40.97		
2ikkA	173	41.56		
1eejA	216	43.73	c.47.1.9,d.17.3.1	33057,38071
2qwvA	208	45.37		
3cnvA	162	47.78		
2oggA	152	49.18		
1zccA	248	52.98	c.1.18.3	124903
1wwpA	119	53.25		
2ooiA	162	55.96		
2aouA	292	56.12	c.66.1.19	127100
2h1rA	299	56.49		
2zgwA	235	59.27		
2dejA	350	61.64		
2f4lA	297	61.97	b.23.3.1	132927
2bl9A	238	62.82		
1r3dA	264	64.96	c.69.1.35	111680
2pieA	138	66.21		
2eayA	233	66.60		
2bwbA	46	66.99	a.5.2.1	129329
1e4yA	214	71.55	c.37.1.1,g.41.2.1	31901,45181
2dsjA	423	71.90		
1im8A	244	72.16	c.66.1.14	66212
3bwgA	239	72.90		
1kafA	108	74.43	d.199.1.1	68372
1gsjA	258	76.72	c.73.1.2	70397
2z0jA	237	80.16		
2okfA	140	80.87		
2pkhA	148	81.71		
1ym5A	300	82.80		
2etjA	250	83.54	c.55.3.1	132360
3bpdA	100	84.74		
1pchA	88	84.75	d.94.1.1	40564
1ee4A	423	85.22	a.118.1.1	19128
1f46A	140	86.30	d.129.4.1	59643
1opdA	85	86.36	d.94.1.1	40560
1nriA	306	87.32	c.80.1.3	86123
1qp8A	303	88.37	c.2.1.4,c.23.12.1	30092,31352
1nt2A	210	89.50	c.66.1.3	86149