# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 3.28e-12 2gcxA 75 2.49e-11 1fx7A 230 0.000195 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2dtrA 226 0.000197 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1qw1A 121 0.000445 2qq9A 226 0.08250 1nrwA 288 0.2650 c.108.1.10 86128 1eejA 216 1.671 c.47.1.9,d.17.3.1 33057,38071 2fa1A 160 1.802 d.190.1.2 133182 1f46A 140 2.710 d.129.4.1 59643 1p57A 114 2.942 d.170.1.2 94125 1mb3A 124 3.534 c.23.1.1 78907 1ri5A 298 5.721 c.66.1.34 97502 1im8A 244 5.947 c.66.1.14 66212 1ddgA 374 8.216 b.43.4.1,c.25.1.4 25671,31559 1kqfB 294 8.504 d.58.1.5,f.23.22.1 75900,75901 2i44A 324 8.925 2basA 431 9.191 c.1.33.1,d.110.6.2 128244,128245 2qwvA 208 9.191 2bb3A 221 9.484 c.90.1.1 128257 2epgA 487 11.94 1s95A 333 12.34 d.159.1.3 105375 2gwmA 200 12.60 1nf2A 268 13.23 c.108.1.10 91849 2r6uA 148 14.57 2fziA 206 15.49 c.71.1.1 134448 1ub0A 258 17.20 c.72.1.2 88394 1j48A 110 17.33 b.1.7.1 84112 1rhsA 296 18.05 c.46.1.2,c.46.1.2 32703,32704 1zx5A 300 18.76 b.82.1.3 125763 2dsjA 423 19.02 2ogeA 399 19.05 1v73A 342 19.31 1wxxA 382 19.46 b.122.1.9,c.66.1.51 121418,121419 2vdjA 301 19.64 2etjA 250 19.67 c.55.3.1 132360 2gkgA 127 19.95 2p19A 149 21.16 2prbA 196 21.41 2jmwA 86 21.42 2q8xA 331 22.06 2uyoA 310 22.68 2dnjA 260 22.96 d.151.1.1 41790 2z26A 347 25.20 2exrA 524 26.54 1vekA 84 27.25 a.5.2.1 113636 2ikkA 173 29.01 1t1gA 364 29.32 c.41.1.2 106246 1h75A 81 29.44 c.47.1.1 60716 2v3mA 131 29.48 1c4kA 730 30.65 c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 1lkdA 297 31.79 d.32.1.3,d.32.1.3 78059,78060 1tqyA 424 32.37 c.95.1.1,c.95.1.1 107245,107246 1zvkA 358 32.78 2raqA 97 33.13 1qamA 244 33.87 c.66.1.24 34220 2olnA 397 34.90 2cb0A 333 35.18 3cnvA 162 36.21 2b8nA 429 37.28 c.118.1.1 128093 1z3eB 73 37.51 a.60.3.1 124401 1ve2A 235 37.93 c.90.1.1 120008 1wr8A 231 38.47 c.108.1.10 114836 2g3fA 421 38.87 1rydA 387 38.88 c.2.1.3,d.81.1.5 118801,118802 1xx6A 191 39.39 c.37.1.24,g.39.1.14 116139,116140 1zc1A 208 39.86 2oggA 152 40.34 1l3iA 192 40.34 c.66.1.22 77676 1qh5A 260 40.61 d.157.1.2 42057 2ooiA 162 42.27 1lrzA 426 42.66 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 2ywwA 149 42.83 2pkhA 148 43.18 2puzA 419 43.61 1nrzA 164 44.35 c.38.1.1 86131 1wrbA 253 46.34 c.37.1.19 121192 2d1hA 109 47.50 a.4.5.50 131125 2ghpA 292 48.13 d.58.7.1,d.58.7.1,d.58.7.1 135184,135185,135186 1io2A 213 48.73 c.55.3.1 62612 1kpgA 287 49.60 c.66.1.18 68735 2nygA 273 50.07 2oap1 511 50.88 1ogdA 131 51.35 c.133.1.1 92893 1bqcA 302 51.74 c.1.8.3 28831 1qhlA 227 52.58 c.37.1.12 32382 2i2cA 272 54.14 4uagA 437 54.20 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1zkcA 197 55.40 b.62.1.1 125182 2pz4A 239 55.50 2fjtA 182 57.27 2jfgA 445 57.44 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 1k9uA 78 57.48 a.39.1.10 84348 2v6oA 596 58.74 2ejqA 130 59.90 1a53A 247 60.47 c.1.2.4 28564 1lvoA 302 60.98 b.47.1.4 74284 1wmdA 434 61.64 b.18.1.20,c.41.1.1 109408,109409 2h1rA 299 62.07 2hkjA 469 62.92 a.156.1.3,d.14.1.3,d.122.1.2 136553,136554,136555 2pii 112 63.01 1xm9A 457 64.03 a.118.1.24 122142 2f8yA 223 64.43 1zjkA 403 66.51 b.47.1.2,g.18.1.1,g.18.1.1 125149,125150,125151 3b3qE 197 67.41 1aukA 489 67.46 c.76.1.2 35030 1va0A 239 68.03 c.90.1.1 119899 2pjhB 193 68.36 2z0xA 158 68.47 1a79A 171 69.02 c.52.2.1,d.75.1.1 33340,39739 2gfiA 458 69.35 3bpdA 100 69.81 2obwA 258 70.43 3cox 507 72.29 2bl9A 238 72.66 2azpA 318 72.99 2if1A 126 73.29 d.64.1.1 39547 3borA 237 75.10 1cr5A 189 76.36 b.52.2.3,d.31.1.1 26931,38465 1mpyA 307 77.68 d.32.1.3,d.32.1.3 38508,38509 1b9mA 265 79.02 a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 2bwnA 401 79.88 c.67.1.4 129368 1d3gA 367 81.19 c.1.4.1 28600 2eenA 183 82.48 2zceA 291 84.56 3c5rA 137 85.85 2hjhA 354 86.05 1eltA 236 86.40 b.47.1.2 26281 1hs6A 611 86.80 a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 2eayA 233 87.15 1t1iA 364 87.60 c.41.1.2 106248 1kafA 108 89.33 d.199.1.1 68372 2gxqA 207 89.87 1q0uA 219 89.97 c.37.1.19 95512