# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	2.78e-12		
2gcxA	75	2.25e-11		
1fx7A	230	0.000132	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2dtrA	226	0.000133	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.000240		
2qq9A	226	0.002171		
1rhsA	296	4.020	c.46.1.2,c.46.1.2	32703,32704
1rhs	296	4.700		
1o69A	394	8.702	c.67.1.4	92560
1j48A	110	10.42	b.1.7.1	84112
1cbfA	285	10.89	c.90.1.1	35587
1uarA	285	11.74	c.46.1.2,c.46.1.2	107762,107763
1h75A	81	14.71	c.47.1.1	60716
1vekA	84	15.15	a.5.2.1	113636
1va0A	239	15.24	c.90.1.1	119899
2c81A	418	15.84		
1ri5A	298	16.04	c.66.1.34	97502
1nrwA	288	16.21	c.108.1.10	86128
1e0cA	271	18.22	c.46.1.2,c.46.1.2	32717,32718
2fa1A	160	20.88	d.190.1.2	133182
2p19A	149	23.11		
2egxA	269	23.47		
2v3mA	131	23.74		
2pieA	138	24.00		
2aotA	292	24.76	c.66.1.19	127098
2gkgA	127	31.16		
2ikkA	173	31.53		
1z3eB	73	31.96	a.60.3.1	124401
2d1hA	109	32.81	a.4.5.50	131125
1f46A	140	33.00	d.129.4.1	59643
1ve2A	235	33.15	c.90.1.1	120008
2ogeA	399	37.96		
1kpgA	287	39.02	c.66.1.18	68735
2ob3A	330	39.83		
1nf2A	268	42.56	c.108.1.10	91849
3cnvA	162	44.08		
1zc1A	208	44.17		
2j85A	122	46.57	d.321.1.1	138133
2qwvA	208	46.74		
2oggA	152	47.85		
3bmvA	683	48.65		
1opdA	85	49.09	d.94.1.1	40560
2bryA	497	49.35		
3bn1A	373	49.82		
2fjtA	182	50.64		
2nygA	273	52.21		
3bwgA	239	52.25		
1pchA	88	54.57	d.94.1.1	40564
2z0jA	237	56.64		
2pkhA	148	58.13		
2ooiA	162	59.73		
1r3dA	264	59.88	c.69.1.35	111680
1zccA	248	61.18	c.1.18.3	124903
1dv0A	47	61.73	a.5.2.1	16289
1eluA	390	61.99	c.67.1.3	34434
1q0uA	219	65.13	c.37.1.19	95512
1y8xB	98	65.72		
3tglA	269	67.01	c.69.1.17	34733
2etjA	250	68.55	c.55.3.1	132360
2ccqA	99	68.77	d.314.1.1	130252
2f4lA	297	70.92	b.23.3.1	132927
2bwbA	46	71.16	a.5.2.1	129329
1p9bA	442	71.65	c.37.1.10	94385
2hjhA	354	73.76		
1ee4A	423	73.88	a.118.1.1	19128
2gxqA	207	74.82		
1xdnA	277	74.93	d.142.2.4	115168
1s95A	333	76.33	d.159.1.3	105375
2dsjA	423	79.57		
2eayA	233	80.66		
1wwpA	119	82.06		
2bb3A	221	83.66	c.90.1.1	128257
2bl9A	238	84.49		
1nt2A	210	84.83	c.66.1.3	86149
2g3fA	421	85.82		
1io2A	213	85.90	c.55.3.1	62612
1ogdA	131	85.91	c.133.1.1	92893
3bpdA	100	87.60		
2py6A	409	88.57		
2ev1A	222	89.12		
2aouA	292	89.97	c.66.1.19	127100