# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	2.48e-11		
2gcxA	75	1.19e-10		
1qw1A	121	0.000496		
2dtrA	226	0.000648	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1fx7A	230	0.001137	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	0.007301		
1ri5A	298	8.331	c.66.1.34	97502
1rhsA	296	14.69	c.46.1.2,c.46.1.2	32703,32704
1rhs	296	17.09		
1uarA	285	17.37	c.46.1.2,c.46.1.2	107762,107763
1vekA	84	18.70	a.5.2.1	113636
1j48A	110	19.28	b.1.7.1	84112
2dsjA	423	21.29		
3bmvA	683	27.23		
2c81A	418	28.52		
1y8xB	98	29.11		
1h75A	81	29.34	c.47.1.1	60716
2pieA	138	32.05		
2fa1A	160	32.67	d.190.1.2	133182
1z3eB	73	33.94	a.60.3.1	124401
2p19A	149	35.67		
1r1gA	31	41.00	g.3.7.2	96816
1z6nA	167	41.15	c.47.1.1	124530
1q0uA	219	41.61	c.37.1.19	95512
1cbfA	285	42.73	c.90.1.1	35587
1e0cA	271	44.04	c.46.1.2,c.46.1.2	32717,32718
2bl9A	238	48.39		
1s95A	333	48.70	d.159.1.3	105375
2py6A	409	50.36		
2oggA	152	50.93		
1brwA	433	51.61	a.46.2.1,c.27.1.1,d.41.3.1	17764,31628,38626
1nrwA	288	52.16	c.108.1.10	86128
1kpgA	287	52.56	c.66.1.18	68735
2etjA	250	54.01	c.55.3.1	132360
2d1hA	109	55.32	a.4.5.50	131125
2v3mA	131	58.14		
2gxqA	207	60.29		
2ev1A	222	63.75		
2ikkA	173	64.97		
2h1rA	299	65.05		
1nf2A	268	67.81	c.108.1.10	91849
1yt8A	539	68.15	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1va0A	239	70.71	c.90.1.1	119899
3cnvA	162	71.05		
1ve2A	235	74.32	c.90.1.1	120008
2nygA	273	76.68		
1im8A	244	76.76	c.66.1.14	66212
1twuA	139	76.82	d.32.1.8	107413
1ufwA	95	77.59	d.58.7.1	99358
1ym5A	300	78.08		
2iq1A	274	79.02		
2gkgA	127	81.70		
2tpt	440	81.71		
1nt4A	391	82.11	c.60.1.2	92102
1qdeA	224	82.99	c.37.1.19	32410
2f4lA	297	83.82	b.23.3.1	132927
2ccqA	99	87.63	d.314.1.1	130252
2ooiA	162	89.34		
1v95A	130	89.48	c.51.1.1	108435