# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	6.63e-10		
2gcxA	75	1.24e-09		
1qw1A	121	0.000917		
2dtrA	226	0.000943	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1fx7A	230	0.000964	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	0.01008		
1y8xB	98	10.33		
1vekA	84	12.07	a.5.2.1	113636
1rhsA	296	12.60	c.46.1.2,c.46.1.2	32703,32704
1j48A	110	14.66	b.1.7.1	84112
1rhs	296	16.66		
1uarA	285	16.70	c.46.1.2,c.46.1.2	107762,107763
2c81A	418	19.35		
1z3eB	73	27.31	a.60.3.1	124401
1h75A	81	30.73	c.47.1.1	60716
3bn1A	373	31.29		
1e0cA	271	33.04	c.46.1.2,c.46.1.2	32717,32718
1ri5A	298	33.23	c.66.1.34	97502
2nygA	273	34.57		
1pchA	88	35.26	d.94.1.1	40564
1o69A	394	37.35	c.67.1.4	92560
1opdA	85	39.30	d.94.1.1	40560
2ev1A	222	41.39		
2ogeA	399	41.78		
1dv0A	47	43.62	a.5.2.1	16289
1ptfA	88	44.04	d.94.1.1	40549
1nrwA	288	44.67	c.108.1.10	86128
1zc1A	208	51.92		
2v3mA	131	52.48		
2fa1A	160	57.16	d.190.1.2	133182
1q0uA	219	57.72	c.37.1.19	95512
2p19A	149	58.81		
2fjtA	182	60.20		
2pieA	138	61.39		
2egxA	269	62.20		
2dsjA	423	63.34		
3bpdA	100	63.92		
2gxqA	207	65.92		
2oggA	152	67.89		
2d1hA	109	68.32	a.4.5.50	131125
2dejA	350	70.12		
1nf2A	268	70.40	c.108.1.10	91849
2f4lA	297	72.00	b.23.3.1	132927
2ccqA	99	72.42	d.314.1.1	130252
1r1gA	31	73.47	g.3.7.2	96816
3cnvA	162	74.25		
1kpgA	287	74.49	c.66.1.18	68735
1qdeA	224	74.76	c.37.1.19	32410
1v95A	130	77.55	c.51.1.1	108435
1vg5A	73	83.15	a.5.2.1	113640
1z6nA	167	84.30	c.47.1.1	124530
1im8A	244	85.24	c.66.1.14	66212
2g3fA	421	86.05		
1pch	88	86.32		
2eayA	233	86.93		
1eluA	390	87.44	c.67.1.3	34434
1gutA	68	88.15	b.40.6.1	65576