# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	6.70e-10		
2gcxA	75	1.21e-09		
1qw1A	121	0.000676		
2dtrA	226	0.001113	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1fx7A	230	0.001784	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	0.009325		
1rhsA	296	7.969	c.46.1.2,c.46.1.2	32703,32704
1rhs	296	9.209		
1j48A	110	10.84	b.1.7.1	84112
1ri5A	298	13.90	c.66.1.34	97502
1y8xB	98	15.20		
1uarA	285	17.04	c.46.1.2,c.46.1.2	107762,107763
1vekA	84	23.10	a.5.2.1	113636
1e0cA	271	24.00	c.46.1.2,c.46.1.2	32717,32718
2p19A	149	25.97		
2f4lA	297	27.54	b.23.3.1	132927
2c81A	418	32.89		
2zgwA	235	34.36		
1r1gA	31	35.02	g.3.7.2	96816
1h75A	81	35.29	c.47.1.1	60716
1z3eB	73	35.41	a.60.3.1	124401
2nygA	273	35.47		
1o69A	394	36.59	c.67.1.4	92560
2fa1A	160	37.21	d.190.1.2	133182
1im8A	244	38.42	c.66.1.14	66212
1zccA	248	39.56	c.1.18.3	124903
1kpgA	287	42.02	c.66.1.18	68735
1q0uA	219	42.25	c.37.1.19	95512
1cbfA	285	42.44	c.90.1.1	35587
3bn1A	373	43.35		
1dv0A	47	44.90	a.5.2.1	16289
1opdA	85	45.65	d.94.1.1	40560
2oggA	152	46.05		
2pieA	138	50.16		
1p9bA	442	51.55	c.37.1.10	94385
2ikkA	173	51.89		
1zc1A	208	52.14		
1nrwA	288	52.51	c.108.1.10	86128
1pchA	88	53.89	d.94.1.1	40564
2eayA	233	54.02		
3bpdA	100	54.52		
3cnvA	162	54.55		
1ve2A	235	55.17	c.90.1.1	120008
1z6nA	167	55.64	c.47.1.1	124530
1va0A	239	58.06	c.90.1.1	119899
2gxqA	207	59.35		
2bb3A	221	60.18	c.90.1.1	128257
2v3mA	131	61.13		
1nf2A	268	62.39	c.108.1.10	91849
3bmvA	683	62.62		
2ogeA	399	66.12		
1ptfA	88	69.69	d.94.1.1	40549
2py6A	409	70.43		
1qdeA	224	70.53	c.37.1.19	32410
2d1hA	109	73.88	a.4.5.50	131125
1v95A	130	74.02	c.51.1.1	108435
1xdnA	277	75.56	d.142.2.4	115168
1i8dA	213	77.08	b.43.4.3,b.43.4.3	61953,61954
1eluA	390	78.02	c.67.1.3	34434
1n28A	124	80.86	a.133.1.2	91550
1yt8A	539	81.47	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1nt4A	391	82.20	c.60.1.2	92102
1s95A	333	84.48	d.159.1.3	105375
2ooiA	162	84.89		
2uv0E	175	85.09		
2iq1A	274	86.09