# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	2.02e-08		
2gcxA	75	5.11e-08		
2dtrA	226	0.005256	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.01485		
2qq9A	226	0.05150		
1fx7A	230	0.5250	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
1rhsA	296	30.47	c.46.1.2,c.46.1.2	32703,32704
2jonA	101	30.51		
2hjhA	354	31.81		
1j48A	110	32.41	b.1.7.1	84112
1wisA	124	37.21	b.1.2.1	120975
1rhs	296	44.01		
2qvpA	275	51.32		
1y8xB	98	56.98		
1uarA	285	60.35	c.46.1.2,c.46.1.2	107762,107763
2nsnA	95	62.06		
2v3mA	131	70.58		
1dv0A	47	71.43	a.5.2.1	16289
2qpqA	301	74.23		
2dvzA	314	74.75		
2gxqA	207	74.87		
1vekA	84	80.91	a.5.2.1	113636
1q0uA	219	82.66	c.37.1.19	95512