# TARGET TR462 # Using neural net dunbrack-40pc-3157-t04-IDGaaH13-3-13-7-13-9-13-11-pb-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 16 (1 pb ) # The input amino acid frequencies were determined from # alignment TR462.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 68.6508 # Pos AA A B C D E F G H I J K L M N O P 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.112 0.006 0.618 0.239 0.001 0.001 0.002 0.008 0.001 0.001 0.001 0.001 0.002 0.001 0.006 0.003 2 K 0.003 0.001 0.020 0.033 0.015 0.888 0.001 0.001 0.002 0.025 0.001 0.001 0.005 0.001 0.001 0.003 3 L 0.004 0.012 0.001 0.027 0.022 0.045 0.001 0.006 0.001 0.001 0.875 0.002 0.003 0.002 0.001 0.001 4 S 0.001 0.421 0.002 0.055 0.001 0.002 0.001 0.027 0.004 0.002 0.004 0.471 0.002 0.001 0.009 0.001 5 R 0.005 0.009 0.353 0.158 0.009 0.008 0.011 0.001 0.039 0.001 0.002 0.004 0.019 0.002 0.003 0.376 6 L 0.069 0.007 0.839 0.041 0.004 0.003 0.005 0.002 0.001 0.001 0.002 0.002 0.009 0.001 0.001 0.015 7 V 0.001 0.001 0.012 0.002 0.789 0.021 0.091 0.001 0.001 0.001 0.001 0.001 0.001 0.081 0.001 0.001 8 P 0.001 0.006 0.001 0.016 0.001 0.010 0.001 0.890 0.001 0.001 0.021 0.001 0.001 0.001 0.051 0.001 9 G 0.001 0.044 0.001 0.011 0.001 0.001 0.001 0.001 0.891 0.024 0.001 0.005 0.001 0.001 0.001 0.022 10 V 0.966 0.001 0.013 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 11 P 0.001 0.009 0.954 0.033 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 12 A 0.001 0.005 0.009 0.984 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 R 0.001 0.002 0.018 0.975 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 I 0.001 0.001 0.006 0.155 0.041 0.797 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 K 0.001 0.632 0.001 0.348 0.001 0.003 0.001 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 16 R 0.001 0.008 0.001 0.940 0.015 0.013 0.001 0.001 0.014 0.003 0.002 0.001 0.001 0.001 0.001 0.001 17 L 0.036 0.009 0.623 0.267 0.012 0.025 0.001 0.014 0.001 0.001 0.005 0.003 0.002 0.001 0.001 0.001 18 E 0.001 0.023 0.032 0.380 0.051 0.465 0.001 0.008 0.004 0.015 0.008 0.004 0.003 0.001 0.001 0.002 19 V 0.005 0.076 0.003 0.140 0.357 0.143 0.013 0.021 0.001 0.004 0.196 0.022 0.007 0.009 0.001 0.001 20 S 0.002 0.034 0.003 0.017 0.003 0.292 0.001 0.300 0.003 0.005 0.113 0.182 0.016 0.001 0.029 0.001 21 G 0.002 0.004 0.002 0.003 0.001 0.018 0.001 0.001 0.018 0.017 0.655 0.130 0.137 0.001 0.001 0.010 22 E 0.010 0.002 0.002 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.050 0.673 0.255 0.001 0.001 0.001 23 L 0.001 0.001 0.002 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.023 0.099 0.871 0.001 0.001 0.001 24 H 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.011 0.985 0.001 0.001 0.001 25 E 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.997 0.001 0.001 0.001 26 K 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.995 0.001 0.001 0.001 27 L 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 28 V 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.982 0.004 0.010 0.001 29 G 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.010 0.976 0.001 0.007 30 M 0.005 0.001 0.011 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.010 0.001 0.965 0.002 31 G 0.001 0.001 0.041 0.003 0.001 0.001 0.001 0.001 0.004 0.003 0.001 0.001 0.003 0.001 0.001 0.943 32 F 0.888 0.007 0.024 0.022 0.012 0.012 0.008 0.001 0.001 0.001 0.004 0.001 0.008 0.001 0.001 0.009 33 V 0.001 0.020 0.035 0.008 0.791 0.020 0.068 0.008 0.001 0.002 0.002 0.001 0.001 0.044 0.001 0.001 34 P 0.001 0.012 0.006 0.062 0.005 0.042 0.001 0.791 0.002 0.001 0.020 0.002 0.001 0.001 0.051 0.001 35 G 0.001 0.050 0.011 0.036 0.001 0.003 0.001 0.001 0.821 0.031 0.005 0.012 0.001 0.001 0.001 0.028 36 E 0.892 0.009 0.018 0.076 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 37 E 0.001 0.004 0.919 0.073 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 38 I 0.001 0.003 0.040 0.954 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 39 E 0.001 0.002 0.007 0.987 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 40 I 0.001 0.001 0.002 0.651 0.016 0.328 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 41 V 0.001 0.157 0.005 0.797 0.004 0.024 0.001 0.006 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 42 Q 0.001 0.023 0.003 0.911 0.019 0.032 0.001 0.001 0.002 0.002 0.003 0.002 0.001 0.001 0.001 0.001 43 V 0.007 0.081 0.182 0.677 0.008 0.021 0.001 0.009 0.001 0.001 0.004 0.003 0.003 0.001 0.001 0.002 44 A 0.005 0.010 0.030 0.250 0.075 0.576 0.004 0.005 0.004 0.017 0.009 0.006 0.007 0.001 0.001 0.001 45 P 0.004 0.069 0.008 0.037 0.559 0.047 0.032 0.020 0.001 0.001 0.176 0.005 0.004 0.035 0.001 0.001 46 L 0.002 0.079 0.004 0.076 0.003 0.014 0.001 0.531 0.008 0.001 0.015 0.041 0.002 0.001 0.219 0.002 47 G 0.007 0.061 0.102 0.040 0.001 0.003 0.006 0.003 0.324 0.072 0.003 0.007 0.005 0.001 0.003 0.361 48 D 0.870 0.013 0.035 0.027 0.001 0.034 0.001 0.001 0.003 0.001 0.002 0.003 0.006 0.001 0.002 0.003 49 P 0.036 0.069 0.593 0.135 0.001 0.094 0.001 0.001 0.002 0.001 0.054 0.004 0.004 0.001 0.001 0.005 50 I 0.009 0.222 0.084 0.660 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.012 0.001 0.001 0.001 0.001 51 V 0.001 0.006 0.124 0.856 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 52 C 0.001 0.006 0.112 0.870 0.004 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 53 K 0.001 0.001 0.004 0.187 0.769 0.033 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 54 I 0.001 0.011 0.002 0.077 0.324 0.207 0.004 0.344 0.001 0.001 0.023 0.001 0.001 0.002 0.002 0.001 55 G 0.001 0.071 0.001 0.047 0.008 0.075 0.001 0.352 0.101 0.178 0.115 0.038 0.002 0.001 0.011 0.002 56 N 0.105 0.144 0.008 0.047 0.004 0.026 0.004 0.009 0.265 0.057 0.152 0.138 0.014 0.002 0.003 0.023 57 R 0.364 0.057 0.254 0.085 0.001 0.018 0.002 0.009 0.007 0.003 0.028 0.110 0.042 0.001 0.012 0.007 58 N 0.021 0.029 0.635 0.140 0.001 0.048 0.004 0.001 0.003 0.003 0.014 0.030 0.050 0.001 0.001 0.020 59 I 0.028 0.017 0.108 0.518 0.004 0.084 0.005 0.002 0.001 0.001 0.050 0.028 0.147 0.002 0.002 0.005 60 T 0.002 0.068 0.069 0.541 0.006 0.061 0.008 0.003 0.001 0.001 0.014 0.047 0.169 0.002 0.002 0.006 61 L 0.002 0.028 0.057 0.620 0.013 0.033 0.010 0.006 0.001 0.001 0.020 0.015 0.183 0.002 0.002 0.006 62 R 0.004 0.020 0.045 0.145 0.031 0.411 0.016 0.013 0.003 0.003 0.026 0.030 0.238 0.007 0.003 0.007 63 K 0.009 0.026 0.026 0.094 0.008 0.073 0.010 0.021 0.004 0.002 0.481 0.030 0.191 0.007 0.012 0.006 64 R 0.007 0.071 0.020 0.054 0.004 0.042 0.012 0.007 0.007 0.004 0.119 0.432 0.186 0.007 0.015 0.012 65 E 0.020 0.084 0.070 0.099 0.002 0.016 0.011 0.004 0.014 0.001 0.027 0.064 0.397 0.007 0.025 0.158 66 A 0.024 0.019 0.136 0.045 0.001 0.083 0.029 0.003 0.004 0.002 0.015 0.050 0.520 0.020 0.012 0.037 67 D 0.006 0.526 0.198 0.118 0.001 0.004 0.001 0.004 0.002 0.001 0.002 0.004 0.079 0.001 0.015 0.039 68 L 0.017 0.012 0.183 0.684 0.001 0.009 0.001 0.001 0.007 0.001 0.001 0.001 0.004 0.002 0.001 0.080 69 I 0.013 0.005 0.884 0.097 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 70 E 0.001 0.003 0.045 0.944 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 71 V 0.001 0.005 0.008 0.959 0.005 0.022 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 72 E 0.001 0.019 0.005 0.905 0.029 0.036 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 73 V 0.001 0.014 0.002 0.350 0.511 0.096 0.003 0.007 0.001 0.001 0.012 0.002 0.001 0.001 0.001 0.001 74 V 0.001 0.098 0.014 0.241 0.080 0.088 0.005 0.389 0.005 0.005 0.035 0.020 0.003 0.001 0.015 0.001 75 G 0.008 0.079 0.017 0.166 0.024 0.104 0.008 0.059 0.163 0.243 0.059 0.032 0.010 0.002 0.008 0.019