# TARGET TR462 # Using neural net dunbrack-40pc-3157-t04-IDGaaH13-3-13-7-13-9-13-11-n_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 n_sep ) # The input amino acid frequencies were determined from # alignment TR462.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 68.6508 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.164 0.049 0.024 0.004 0.003 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.295 0.011 0.045 0.391 2 K 0.009 0.019 0.003 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.113 0.003 0.203 0.638 3 L 0.019 0.006 0.002 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.177 0.002 0.063 0.721 4 S 0.032 0.029 0.001 0.001 0.001 0.002 0.002 0.003 0.002 0.001 0.001 0.004 0.008 0.022 0.004 0.002 0.253 0.011 0.204 0.417 5 R 0.460 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.001 0.011 0.002 0.004 0.002 0.029 0.026 0.042 0.402 6 L 0.295 0.093 0.010 0.002 0.001 0.001 0.001 0.001 0.002 0.140 0.003 0.001 0.001 0.001 0.001 0.001 0.096 0.027 0.043 0.282 7 V 0.032 0.017 0.003 0.001 0.001 0.001 0.001 0.001 0.088 0.002 0.006 0.002 0.001 0.001 0.001 0.001 0.063 0.005 0.416 0.361 8 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 9 G 0.080 0.004 0.001 0.001 0.001 0.002 0.002 0.001 0.003 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.214 0.039 0.079 0.569 10 V 0.800 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.001 0.063 0.119 11 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 12 A 0.006 0.001 0.001 0.001 0.091 0.081 0.051 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.589 0.001 0.036 0.138 13 R 0.006 0.001 0.001 0.001 0.001 0.010 0.003 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.848 0.001 0.015 0.111 14 I 0.002 0.001 0.001 0.001 0.002 0.001 0.020 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.005 0.778 0.001 0.019 0.164 15 K 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.953 0.001 0.010 0.028 16 R 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.027 0.038 0.012 0.379 0.001 0.052 0.475 17 L 0.006 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.003 0.056 0.063 0.039 0.010 0.585 0.001 0.058 0.171 18 E 0.011 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.010 0.012 0.003 0.016 0.007 0.006 0.002 0.291 0.002 0.148 0.481 19 V 0.032 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.042 0.016 0.010 0.003 0.001 0.001 0.001 0.001 0.143 0.004 0.091 0.647 20 S 0.010 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.042 0.003 0.141 0.791 21 G 0.020 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.008 0.056 0.908 22 E 0.125 0.013 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.012 0.234 0.598 23 L 0.066 0.113 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.005 0.395 0.403 24 H 0.043 0.669 0.005 0.001 0.006 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.022 0.007 0.058 0.184 25 E 0.012 0.797 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.004 0.027 0.147 26 K 0.009 0.905 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.005 0.012 0.063 27 L 0.007 0.967 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.003 0.002 0.016 28 V 0.009 0.959 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.006 0.001 0.021 29 G 0.030 0.928 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.007 0.001 0.029 30 M 0.159 0.566 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.236 0.001 0.026 31 G 0.531 0.093 0.035 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.007 0.251 0.003 0.074 32 F 0.015 0.012 0.823 0.012 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.012 0.004 0.007 0.113 33 V 0.004 0.004 0.005 0.006 0.001 0.001 0.001 0.001 0.024 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.127 0.001 0.459 0.364 34 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 35 G 0.019 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.416 0.015 0.150 0.393 36 E 0.817 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.024 0.003 0.053 0.097 37 E 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.092 0.001 0.024 0.877 38 I 0.006 0.001 0.001 0.001 0.101 0.050 0.025 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.681 0.001 0.020 0.106 39 E 0.003 0.001 0.001 0.001 0.002 0.024 0.006 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.870 0.001 0.015 0.071 40 I 0.002 0.002 0.001 0.001 0.001 0.001 0.012 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.835 0.001 0.018 0.121 41 V 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.942 0.001 0.012 0.032 42 Q 0.005 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.005 0.012 0.018 0.006 0.690 0.002 0.040 0.209 43 V 0.043 0.006 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.017 0.001 0.014 0.009 0.014 0.006 0.334 0.011 0.068 0.472 44 A 0.019 0.006 0.002 0.001 0.001 0.001 0.001 0.001 0.004 0.040 0.005 0.003 0.009 0.004 0.002 0.002 0.514 0.004 0.084 0.300 45 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.998 46 L 0.012 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.252 0.002 0.078 0.642 47 G 0.183 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.088 0.015 0.059 0.636 48 D 0.412 0.002 0.004 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.024 0.006 0.226 0.318 49 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.996 50 I 0.009 0.001 0.001 0.001 0.040 0.090 0.031 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.488 0.001 0.155 0.168 51 V 0.012 0.001 0.001 0.001 0.013 0.031 0.022 0.021 0.001 0.001 0.001 0.001 0.001 0.014 0.020 0.008 0.539 0.002 0.056 0.258 52 C 0.004 0.004 0.001 0.001 0.004 0.002 0.022 0.006 0.001 0.001 0.002 0.001 0.193 0.136 0.057 0.031 0.397 0.001 0.016 0.124 53 K 0.002 0.006 0.001 0.001 0.001 0.001 0.002 0.006 0.001 0.013 0.008 0.003 0.037 0.011 0.011 0.006 0.758 0.001 0.024 0.108 54 I 0.002 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.318 0.064 0.016 0.007 0.003 0.002 0.001 0.003 0.431 0.001 0.032 0.113 55 G 0.002 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.035 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.446 0.001 0.101 0.397 56 N 0.018 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.102 0.033 0.140 0.700 57 R 0.330 0.004 0.030 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.058 0.049 0.088 0.438 58 N 0.017 0.020 0.014 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.272 0.003 0.278 0.390 59 I 0.012 0.029 0.006 0.004 0.351 0.026 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.278 0.003 0.105 0.176 60 T 0.028 0.153 0.006 0.002 0.033 0.044 0.008 0.006 0.001 0.001 0.001 0.001 0.004 0.005 0.004 0.004 0.327 0.007 0.083 0.282 61 L 0.035 0.204 0.005 0.001 0.001 0.002 0.009 0.003 0.004 0.001 0.001 0.001 0.005 0.009 0.005 0.004 0.386 0.009 0.077 0.237 62 R 0.044 0.342 0.004 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.003 0.001 0.002 0.002 0.002 0.001 0.188 0.018 0.093 0.293 63 K 0.065 0.185 0.011 0.001 0.001 0.001 0.001 0.001 0.007 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.309 0.036 0.057 0.320 64 R 0.033 0.091 0.006 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.046 0.009 0.109 0.702 65 E 0.132 0.054 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.124 0.028 0.233 0.418 66 A 0.294 0.214 0.016 0.002 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.106 0.034 0.059 0.270 67 D 0.174 0.135 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.307 0.025 0.087 0.262 68 L 0.331 0.101 0.009 0.002 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.166 0.024 0.044 0.316 69 I 0.152 0.099 0.016 0.001 0.002 0.002 0.005 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.527 0.018 0.022 0.150 70 E 0.015 0.017 0.004 0.001 0.003 0.002 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.754 0.004 0.031 0.161 71 V 0.006 0.008 0.007 0.001 0.003 0.001 0.004 0.002 0.001 0.001 0.001 0.001 0.003 0.010 0.011 0.008 0.547 0.003 0.027 0.356 72 E 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.010 0.005 0.004 0.872 0.001 0.023 0.069 73 V 0.006 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.004 0.001 0.004 0.006 0.007 0.004 0.201 0.002 0.057 0.697 74 V 0.007 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.006 0.005 0.003 0.005 0.004 0.002 0.003 0.751 0.002 0.056 0.140 75 G 0.014 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.002 0.004 0.001 0.002 0.001 0.001 0.001 0.122 0.005 0.116 0.713