# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	1.43e-11		
2gcxA	75	3.56e-11		
1fx7A	230	3.03e-05	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	0.000142		
2dtrA	226	0.000795	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.001684		
2dtr	226	0.03091		
1bymA	97	0.7600	b.34.1.2	24458
1rhs	296	4.089		
1h75A	81	5.028	c.47.1.1	60716
1rhsA	296	7.363	c.46.1.2,c.46.1.2	32703,32704
1e0cA	271	9.174	c.46.1.2,c.46.1.2	32717,32718
2c81A	418	11.92		
1s68A	249	13.05	d.142.2.4	98591
2fa1A	160	13.36	d.190.1.2	133182
1cbfA	285	14.47	c.90.1.1	35587
2qh8A	302	14.57		
2bb3A	221	15.26	c.90.1.1	128257
1va0A	239	16.66	c.90.1.1	119899
1z2mA	155	18.38	d.15.1.1,d.15.1.1	124387,124388
3cnvA	162	18.68		
1mdoA	393	19.28	c.67.1.4	79013
1pbeA	394	21.63	c.3.1.2,d.16.1.2	30338,37869
1uarA	285	24.29	c.46.1.2,c.46.1.2	107762,107763
1pjqA	457	25.28	c.2.1.11,c.90.1.1,e.37.1.1	94766,94767,94768
2qwvA	208	25.98		
2ikkA	173	26.98		
1y8xB	98	29.24		
1zc1A	208	29.99		
2oggA	152	31.64		
1xhlA	297	33.12	c.2.1.2	109591
3bn1A	373	33.18		
2py6A	409	36.33		
2pkhA	148	36.82		
1sfxA	109	36.83	a.4.5.50	105505
1z3eB	73	36.93	a.60.3.1	124401
1xkqA	280	37.39	c.2.1.2	115417
1vkjA	285	38.52	c.37.1.5	108666
2j85A	122	38.63	d.321.1.1	138133
2d1hA	109	39.46	a.4.5.50	131125
1wohA	305	39.90	c.42.1.1	109446
1o69A	394	40.60	c.67.1.4	92560
1opdA	85	40.74	d.94.1.1	40560
1hrkA	359	41.08	c.92.1.1	61228
2pwyA	258	43.05		
1ne2A	200	43.10	c.66.1.32	85586
2h1rA	299	45.04		
1pchA	88	45.64	d.94.1.1	40564
2p19A	149	45.67		
1b9hA	388	45.83	c.67.1.4	34488
1r1gA	31	48.36	g.3.7.2	96816
2z6rA	265	49.87		
1elqA	390	50.20	c.67.1.3	34436
2ccqA	99	51.62	d.314.1.1	130252
1x8mA	288	55.27	b.82.1.13	109516
1qusA	322	55.68	d.2.1.6	36991
1vekA	84	58.38	a.5.2.1	113636
1nrvA	105	60.30	d.93.1.1	86126
1ptfA	88	60.99	d.94.1.1	40549
1lb2B	84	64.22	a.60.3.1	77871
1ve2A	235	64.40	c.90.1.1	120008
2nwiA	172	64.47		
2azpA	318	65.79		
2ooiA	162	65.81		
2eayA	233	66.75		
2graA	277	68.06		
1pch	88	68.23		
2vsgA	358	68.37	h.4.1.1	45780
2eenA	183	68.77		
1y51A	88	69.31		
2nygA	273	69.72		
1opd	85	71.29		
2e5vA	472	71.67		
1zccA	248	72.48	c.1.18.3	124903
2dekA	265	73.58	c.90.1.1	131430
2pkpA	170	81.58		
3bwgA	239	83.59		
2ogeA	399	83.83		
1xdnA	277	84.37	d.142.2.4	115168
1dv0A	47	84.41	a.5.2.1	16289
1a8i	842	86.54		
2fziA	206	86.84	c.71.1.1	134448