# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gcxA 75 9.13e-13 2h3jA 75 1.31e-12 1fx7A 230 1.48e-06 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2qq9A 226 8.06e-05 1qw1A 121 0.000217 2dtrA 226 0.000874 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2dtr 226 0.04372 1bymA 97 0.1683 b.34.1.2 24458 1mdoA 393 0.8924 c.67.1.4 79013 2c81A 418 1.111 3bn1A 373 1.662 1o69A 394 1.667 c.67.1.4 92560 1b9hA 388 2.354 c.67.1.4 34488 1rhs 296 2.800 1uarA 285 3.168 c.46.1.2,c.46.1.2 107762,107763 1h75A 81 3.333 c.47.1.1 60716 2ogeA 399 3.342 1e0cA 271 3.787 c.46.1.2,c.46.1.2 32717,32718 2qh8A 302 4.465 1rhsA 296 4.775 c.46.1.2,c.46.1.2 32703,32704 1zc1A 208 5.233 2ghaA 382 5.603 1z2mA 155 5.913 d.15.1.1,d.15.1.1 124387,124388 1opdA 85 6.591 d.94.1.1 40560 2nygA 273 7.737 1nrvA 105 8.055 d.93.1.1 86126 1pchA 88 8.367 d.94.1.1 40564 1y8xB 98 9.088 1ptfA 88 9.517 d.94.1.1 40549 1elqA 390 9.751 c.67.1.3 34436 1yemA 179 10.18 d.63.1.2 116646 1opd 85 10.53 1y51A 88 11.16 1pch 88 11.20 1v5tA 90 11.38 d.15.1.1 108385 2fa1A 160 11.88 d.190.1.2 133182 1s68A 249 12.69 d.142.2.4 98591 1sphA 88 13.79 d.94.1.1 40544 1eluA 390 14.09 c.67.1.3 34434 1ptf 88 14.11 3cnvA 162 14.21 1hrkA 359 14.85 c.92.1.1 61228 1ne2A 200 15.10 c.66.1.32 85586 2qtdA 105 15.15 1lb2B 84 15.46 a.60.3.1 77871 2yvlA 248 17.26 1ydgA 211 18.24 c.23.5.8 116614 1vekA 84 21.40 a.5.2.1 113636 2o55A 258 21.49 1v2yA 105 23.47 d.15.1.1 100275 2okfA 140 23.93 2p19A 149 25.18 2fjtA 182 27.50 3bwgA 239 27.51 2pfrA 294 27.66 3cq9A 227 28.79 1z3eB 73 29.91 a.60.3.1 124401 2ikkA 173 30.17 2ooiA 162 30.28 1xkqA 280 30.34 c.2.1.2 115417 1sfxA 109 31.18 a.4.5.50 105505 1vg5A 73 31.35 a.5.2.1 113640 1xhlA 297 31.86 c.2.1.2 109591 2qwvA 208 33.21 2d1hA 109 33.63 a.4.5.50 131125 1k0wA 231 34.52 c.74.1.1 77220 1fr3A 67 36.17 b.40.6.1 25436 1jyhA 157 36.82 d.60.1.3 71956 2azpA 318 36.98 2vsgA 358 37.19 h.4.1.1 45780 2pwyA 258 37.40 1fqtA 112 38.75 b.33.1.1 24441 1mq4A 272 38.91 d.144.1.7 91391 1dv0A 47 39.79 a.5.2.1 16289 2eayA 233 39.90 1mdwA 328 39.98 d.3.1.3 84934 1u9iA 519 42.84 c.37.1.11,c.37.1.11 119637,119638 2fncA 381 43.42 1dm9A 133 43.56 d.66.1.3 39560 2pkhA 148 44.01 3bkxA 275 44.08 1x8mA 288 44.13 b.82.1.13 109516 2iq1A 274 44.98 3dfuA 232 46.76 2g8jA 339 49.11 d.3.1.3 134773 1z02A 446 49.37 2inbA 140 50.89 2acaA 189 51.68 d.63.1.2 126545 2egxA 269 52.92 1el6A 219 53.62 d.182.1.1 42606 1vkjA 285 54.10 c.37.1.5 108666 1o6aA 96 54.17 b.139.1.1 92562 1cbfA 285 57.32 c.90.1.1 35587 1va0A 239 57.42 c.90.1.1 119899 1v95A 130 57.79 c.51.1.1 108435 1r1gA 31 58.73 g.3.7.2 96816 2e5vA 472 60.10 2od0A 105 60.21 2vqeN 61 61.13 1fjgN 61 63.60 g.39.1.7 45154 2uubN 61 63.96 g.39.1.7 139945 1qusA 322 64.45 d.2.1.6 36991 1dl5A 317 64.87 c.66.1.7,d.197.1.1 64720,64721 1eysH 259 65.36 b.41.1.1,f.23.10.1 25484,43517 3bhdA 234 66.44 1wc2A 181 67.52 1pjqA 457 68.34 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1ygtA 111 68.37 2h41A 95 69.26 3ch0A 272 69.28 2j85A 122 69.28 d.321.1.1 138133 2eenA 183 69.65 2nwiA 172 70.82 2zbvA 263 71.06 1qyrA 252 71.52 c.66.1.24 104657 1pjzA 203 71.87 c.66.1.36 94794 2p4zA 284 74.45 2uyoA 310 75.59 2ns5A 85 75.83 1p3jA 217 76.06 c.37.1.1,g.41.2.1 94022,94023 1z0rA 53 77.18 b.129.1.3 124326 1pgyA 47 77.27 a.5.2.1 94696 2ev1A 222 77.34 1tl9A 339 78.26 d.3.1.3 112505 3bkhA 268 79.07 2h1rA 299 79.42 2hdeA 148 79.59 2bwbA 46 80.15 a.5.2.1 129329 1mo1A 87 81.30 d.94.1.1 91363 1nddA 76 81.71 d.15.1.1 37599 2oogA 287 85.55 1yfbA 59 86.33 b.129.1.3 123057 1npyA 271 86.37 c.2.1.7,c.58.1.5 85995,85996 2d0iA 333 86.57 1kafA 108 86.70 d.199.1.1 68372 2j6iA 364 88.32 2pieA 138 89.95