# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	1.68e-10		
2gcxA	75	4.51e-10		
1fx7A	230	0.000211	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	0.000301		
2dtrA	226	0.001960	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
2dtr	226	0.01670		
1qw1A	121	0.01689		
1bymA	97	2.116	b.34.1.2	24458
2c81A	418	6.399		
1h75A	81	6.665	c.47.1.1	60716
1mdoA	393	8.043	c.67.1.4	79013
1rhs	296	9.125		
3bn1A	373	9.290		
1e0cA	271	12.21	c.46.1.2,c.46.1.2	32717,32718
1o69A	394	12.63	c.67.1.4	92560
1a8i	842	14.46		
1vkjA	285	14.48	c.37.1.5	108666
1uarA	285	20.07	c.46.1.2,c.46.1.2	107762,107763
1s68A	249	22.88	d.142.2.4	98591
1elqA	390	24.59	c.67.1.3	34436
1rhsA	296	25.24	c.46.1.2,c.46.1.2	32703,32704
2ogeA	399	25.76		
2graA	277	27.60		
2bb3A	221	28.42	c.90.1.1	128257
1b9hA	388	28.98	c.67.1.4	34488
1ne2A	200	29.36	c.66.1.32	85586
1wohA	305	29.94	c.42.1.1	109446
1va0A	239	33.19	c.90.1.1	119899
2pwyA	258	34.90		
1eluA	390	35.25	c.67.1.3	34434
1yemA	179	36.42	d.63.1.2	116646
1pbeA	394	38.10	c.3.1.2,d.16.1.2	30338,37869
2vsgA	358	39.51	h.4.1.1	45780
1y8xB	98	40.73		
1z3eB	73	43.15	a.60.3.1	124401
2d1hA	109	44.80	a.4.5.50	131125
1xhlA	297	45.55	c.2.1.2	109591
2h1rA	299	45.69		
1cbfA	285	49.36	c.90.1.1	35587
1sfxA	109	51.80	a.4.5.50	105505
1xkqA	280	56.84	c.2.1.2	115417
1z2mA	155	60.23	d.15.1.1,d.15.1.1	124387,124388
1nrvA	105	61.80	d.93.1.1	86126
2fa1A	160	63.27	d.190.1.2	133182
2z6rA	265	63.45		
1opdA	85	64.89	d.94.1.1	40560
1jyhA	157	64.99	d.60.1.3	71956
1pchA	88	66.04	d.94.1.1	40564
2j85A	122	69.22	d.321.1.1	138133
1hrkA	359	69.77	c.92.1.1	61228
2ghaA	382	74.29		
2qh8A	302	74.50		
1wb4A	297	75.02	c.69.1.2	120827
1x8mA	288	75.17	b.82.1.13	109516
1kmvA	186	75.24	c.71.1.1	72757
1lb2B	84	76.28	a.60.3.1	77871
1wc2A	181	76.62		
2rfaA	232	79.56		
2pkhA	148	80.27		
2nygA	273	80.50		
2qwvA	208	85.91		
2fjtA	182	89.22