# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2gcxA	75	1.70e-10		
2h3jA	75	4.22e-10		
1qw1A	121	0.001085		
1fx7A	230	0.001863	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	0.006865		
2dtrA	226	0.009760	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1bymA	97	1.325	b.34.1.2	24458
1h75A	81	3.693	c.47.1.1	60716
1rhs	296	3.879		
1uarA	285	4.025	c.46.1.2,c.46.1.2	107762,107763
1e0cA	271	6.150	c.46.1.2,c.46.1.2	32717,32718
1rhsA	296	7.533	c.46.1.2,c.46.1.2	32703,32704
2dtr	226	10.63		
1ne2A	200	14.39	c.66.1.32	85586
1vekA	84	14.87	a.5.2.1	113636
1z3eB	73	15.94	a.60.3.1	124401
2oqoA	200	25.88		
1dv0A	47	26.10	a.5.2.1	16289
1pbeA	394	28.81	c.3.1.2,d.16.1.2	30338,37869
3bpdA	100	28.87		
3bn1A	373	29.89		
2qh8A	302	30.11		
1phtA	85	31.64	b.34.2.1	24483
1lb2B	84	31.66	a.60.3.1	77871
1y8xB	98	34.79		
1vg5A	73	38.52	a.5.2.1	113640
1go3F	107	40.80	a.60.8.2	65407
1qamA	244	44.66	c.66.1.24	34220
1v4vA	376	47.79	c.87.1.3	100313
2vsgA	358	54.79	h.4.1.1	45780
2qtdA	105	54.96		
1y8qB	640	55.40		
1kafA	108	57.55	d.199.1.1	68372
1u9lA	70	59.23	a.60.4.2	107751
2h1rA	299	59.93		
1erxA	184	60.17	b.60.1.1	27164
1ptfA	88	60.88	d.94.1.1	40549
1pchA	88	65.43	d.94.1.1	40564
1pgyA	47	68.00	a.5.2.1	94696
1sfxA	109	69.07	a.4.5.50	105505
1pht	85	69.15		
1ci4A	89	70.96	a.60.5.1	17970
1jr5A	90	73.64	a.150.1.1	67113
2gxqA	207	75.63		
1pch	88	77.48		
1cbfA	285	83.48	c.90.1.1	35587
1sphA	88	84.01	d.94.1.1	40544
1opdA	85	86.65	d.94.1.1	40560
2d1hA	109	86.95	a.4.5.50	131125
1qusA	322	87.36	d.2.1.6	36991
1ptf	88	88.35		
2ogeA	399	89.71		
2qsfX	171	90.00