# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 3.72e-12 2gcxA 75 1.38e-11 1fx7A 230 2.55e-05 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2dtrA 226 0.000305 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2dtr 226 0.000742 2qq9A 226 0.004102 1qw1A 121 0.005596 1bymA 97 0.8524 b.34.1.2 24458 1p57A 114 3.524 d.170.1.2 94125 2fa1A 160 3.584 d.190.1.2 133182 1f46A 140 4.477 d.129.4.1 59643 2hpkA 208 6.733 2vduE 254 6.791 1h75A 81 7.599 c.47.1.1 60716 2prbA 196 7.962 1eejA 216 8.396 c.47.1.9,d.17.3.1 33057,38071 1wxxA 382 9.197 b.122.1.9,c.66.1.51 121418,121419 2azpA 318 9.280 2bb3A 221 9.865 c.90.1.1 128257 2qwvA 208 11.28 2rk0A 136 11.98 1zvkA 358 12.21 3cddA 361 12.71 1xm9A 457 13.42 a.118.1.24 122142 1rhsA 296 14.01 c.46.1.2,c.46.1.2 32703,32704 2gwmA 200 15.43 1qamA 244 16.45 c.66.1.24 34220 2q01A 497 17.25 1kjqA 391 17.79 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1gteA 1025 18.39 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1t9bA 677 19.14 c.31.1.3,c.36.1.5,c.36.1.9 112334,112335,112336 2i44A 324 20.36 2dt4A 143 20.67 2jmwA 86 21.59 1pqhA 143 22.72 b.52.2.1 95017 2uyoA 310 22.74 1e0cA 271 24.03 c.46.1.2,c.46.1.2 32717,32718 1mpyA 307 24.15 d.32.1.3,d.32.1.3 38508,38509 1gegA 256 25.16 c.2.1.2 29888 2ogeA 399 26.17 2etjA 250 26.21 c.55.3.1 132360 1yemA 179 26.41 d.63.1.2 116646 1go3F 107 26.59 a.60.8.2 65407 1ty0A 211 26.70 b.40.2.2,d.15.6.1 107440,107441 2pkhA 148 27.44 2izzA 322 27.64 2oy0A 262 28.94 2ywwA 149 29.54 2fziA 206 30.61 c.71.1.1 134448 2hjsA 340 31.88 c.2.1.3,d.81.1.1 136547,136548 2p19A 149 32.14 2ooiA 162 32.84 3cnvA 162 33.10 2ikkA 173 33.68 2qjcA 262 34.22 1nrvA 105 35.34 d.93.1.1 86126 1ofgA 381 35.70 c.2.1.3,d.81.1.5 30064,39979 1z3eB 73 35.71 a.60.3.1 124401 2obwA 258 35.90 1uby 367 36.63 1zkcA 197 36.95 b.62.1.1 125182 1j99A 293 37.38 c.37.1.5 71618 1t1gA 364 37.47 c.41.1.2 106246 2epgA 487 37.85 1lrzA 426 39.04 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 2cb0A 333 39.17 2olnA 397 41.79 1hg8A 349 41.88 b.80.1.3 65830 1k1eA 180 41.99 c.108.1.5 67995 1xsjA 778 42.17 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 115951,115952,115953,115954 2pii 112 42.21 1jc4A 148 42.80 d.32.1.4 62863 1eudA 311 44.15 c.2.1.8,c.23.4.1 30312,31140 2f8yA 223 44.51 3cumA 302 44.78 1z2mA 155 46.33 d.15.1.1,d.15.1.1 124387,124388 2r7dA 469 46.53 1zzmA 259 46.58 c.1.9.12 125911 1u0tA 307 47.07 e.52.1.1 107567 1rhs 296 47.69 1nj4A 363 48.14 b.105.1.1,e.3.1.1 80545,80546 2basA 431 48.60 c.1.33.1,d.110.6.2 128244,128245 1u9iA 519 48.66 c.37.1.11,c.37.1.11 119637,119638 1hbq 183 48.73 1tkiA 321 49.17 d.144.1.7 41638 2dnjA 260 49.85 d.151.1.1 41790 1fnyA 237 51.99 b.29.1.1 59920 1fjmA 330 52.22 d.159.1.3 42082 1kdvA 370 52.38 c.41.1.2 68486 1z7yA 322 53.18 c.79.1.1 124679 2depA 356 54.08 2c9hA 444 54.47 1wrbA 253 55.26 c.37.1.19 121192 1vi6A 208 55.67 c.23.15.1 100736 1scuA 288 55.87 c.2.1.8,c.23.4.1 30307,31135 2c07A 285 56.33 c.2.1.2 129577 2qxvA 361 57.23 2pwyA 258 57.80 1np3A 338 60.07 a.100.1.2,c.2.1.6 85946,85947 2nygA 273 60.22 1g0uL 241 60.86 d.153.1.4 41894 1t8hA 277 60.88 d.194.1.2 106664 1lkdA 297 61.93 d.32.1.3,d.32.1.3 78059,78060 2raqA 97 62.14 1u3wA 374 63.16 b.35.1.2,c.2.1.1 113013,113014 2f1kA 279 63.61 a.100.1.12,c.2.1.6 132772,132773 3cq9A 227 64.77 2o2yA 349 65.13 c.2.1.2 138894 1pbeA 394 65.40 c.3.1.2,d.16.1.2 30338,37869 2h1rA 299 65.59 3cnqP 80 67.21 2oggA 152 67.34 2eenA 183 68.36 1xvlA 321 68.68 c.92.2.2 122380 1im8A 244 68.85 c.66.1.14 66212 1ve2A 235 72.62 c.90.1.1 120008 1yloA 348 73.10 b.49.3.1,c.56.5.4 123659,123660 2q4zA 312 74.88 3b3qE 197 74.99 1wohA 305 75.15 c.42.1.1 109446 2f1nA 262 75.67 d.151.1.1 132782 2rfqA 394 75.73 1u32A 293 76.28 d.159.1.3 107631 1nrwA 288 76.84 c.108.1.10 86128 1uasA 362 76.97 b.71.1.1,c.1.8.1 88388,88389 2g1iA 563 77.91 2oegA 505 80.00 2fjtA 182 80.62 1b63A 333 80.78 d.14.1.3,d.122.1.2 37566,41107 3bwgA 239 81.06 1spxA 278 83.01 c.2.1.2 98958 2d1hA 109 83.59 a.4.5.50 131125 1z9tA 255 83.84 2nwiA 172 83.84 1sfxA 109 84.17 a.4.5.50 105505 2q3wA 111 84.24 b.33.1.1 139813 1e4eA 343 84.64 c.30.1.2,d.142.1.1 59221,59222 1zc1A 208 85.18 2c3zA 222 86.43 1lb2B 84 89.46 a.60.3.1 77871