# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	8.05e-13		
2gcxA	75	4.50e-12		
1fx7A	230	1.18e-05	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	5.03e-05		
2dtrA	226	0.000170	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
2dtr	226	0.001800		
1qw1A	121	0.002898		
1bymA	97	1.315	b.34.1.2	24458
1rhs	296	1.806		
1h75A	81	3.223	c.47.1.1	60716
1rhsA	296	3.522	c.46.1.2,c.46.1.2	32703,32704
1e0cA	271	7.112	c.46.1.2,c.46.1.2	32717,32718
2c81A	418	8.667		
1mdoA	393	9.102	c.67.1.4	79013
1o69A	394	11.45	c.67.1.4	92560
1ne2A	200	11.54	c.66.1.32	85586
1va0A	239	14.23	c.90.1.1	119899
1b9hA	388	14.33	c.67.1.4	34488
1cbfA	285	16.61	c.90.1.1	35587
1s68A	249	17.31	d.142.2.4	98591
1vkjA	285	18.94	c.37.1.5	108666
1wohA	305	19.12	c.42.1.1	109446
3bn1A	373	22.00		
1uarA	285	22.60	c.46.1.2,c.46.1.2	107762,107763
1a8i	842	24.79		
1elqA	390	25.29	c.67.1.3	34436
2ogeA	399	27.73		
1z2mA	155	28.29	d.15.1.1,d.15.1.1	124387,124388
1z3eB	73	31.54	a.60.3.1	124401
2qwvA	208	31.71		
2graA	277	32.23		
1pjqA	457	32.98	c.2.1.11,c.90.1.1,e.37.1.1	94766,94767,94768
2pkhA	148	33.06		
3cnvA	162	33.61		
2ikkA	173	34.72		
2fa1A	160	35.03	d.190.1.2	133182
2j85A	122	36.68	d.321.1.1	138133
2px2A	269	37.86		
1nrvA	105	37.87	d.93.1.1	86126
2p19A	149	41.20		
2pwyA	258	43.20		
2vsgA	358	44.05	h.4.1.1	45780
2h1rA	299	44.21		
2z0jA	237	45.25		
2d1hA	109	45.61	a.4.5.50	131125
1hrkA	359	47.07	c.92.1.1	61228
1sfxA	109	49.06	a.4.5.50	105505
1ve2A	235	49.22	c.90.1.1	120008
1eluA	390	51.05	c.67.1.3	34434
2pieA	138	51.26		
1vekA	84	51.59	a.5.2.1	113636
1x8mA	288	52.04	b.82.1.13	109516
2nygA	273	55.62		
1zccA	248	56.04	c.1.18.3	124903
2bb3A	221	57.73	c.90.1.1	128257
1wc2A	181	57.87		
1opdA	85	58.64	d.94.1.1	40560
1pchA	88	59.84	d.94.1.1	40564
1jyhA	157	62.31	d.60.1.3	71956
2ooiA	162	63.00		
2bwbA	46	63.90	a.5.2.1	129329
1lb2B	84	64.21	a.60.3.1	77871
2qtdA	105	65.35		
2qh8A	302	68.26		
2ghaA	382	69.99		
3bwgA	239	70.83		
2oggA	152	72.99		
2z6rA	265	75.39		
1xhlA	297	78.78	c.2.1.2	109591
1f46A	140	79.18	d.129.4.1	59643
1zc1A	208	79.53		
1mq4A	272	80.15	d.144.1.7	91391
1mun	225	84.27		
2fziA	206	87.32	c.71.1.1	134448
1yemA	179	89.49	d.63.1.2	116646