# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	2.56e-11		
2gcxA	75	7.00e-11		
2qq9A	226	0.000243		
1fx7A	230	0.000256	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2dtrA	226	0.000894	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.006798		
2dtr	226	0.008166		
1bymA	97	0.4344	b.34.1.2	24458
1h75A	81	7.346	c.47.1.1	60716
2c81A	418	8.728		
1rhs	296	10.48		
3bn1A	373	16.13		
1e0cA	271	17.17	c.46.1.2,c.46.1.2	32717,32718
1mdoA	393	19.79	c.67.1.4	79013
1rhsA	296	21.30	c.46.1.2,c.46.1.2	32703,32704
1uarA	285	25.20	c.46.1.2,c.46.1.2	107762,107763
1wohA	305	25.76	c.42.1.1	109446
2pwyA	258	31.95		
1y8xB	98	34.08		
2ogeA	399	34.73		
1hrkA	359	37.94	c.92.1.1	61228
1z3eB	73	41.77	a.60.3.1	124401
1vkjA	285	44.98	c.37.1.5	108666
2vsgA	358	45.03	h.4.1.1	45780
1r1gA	31	46.16	g.3.7.2	96816
1z2mA	155	48.24	d.15.1.1,d.15.1.1	124387,124388
1wc2A	181	48.41		
2bb3A	221	48.89	c.90.1.1	128257
2h1rA	299	50.25		
1ne2A	200	51.71	c.66.1.32	85586
2fa1A	160	51.81	d.190.1.2	133182
3cnvA	162	52.13		
1o69A	394	53.33	c.67.1.4	92560
1sfxA	109	53.51	a.4.5.50	105505
2z6rA	265	54.96		
2pkhA	148	55.15		
1elqA	390	56.32	c.67.1.3	34436
2etjA	250	57.04	c.55.3.1	132360
1a8i	842	57.81		
1pbeA	394	58.98	c.3.1.2,d.16.1.2	30338,37869
2yvlA	248	65.66		
1cbfA	285	65.96	c.90.1.1	35587
2pieA	138	66.56		
1s68A	249	67.18	d.142.2.4	98591
2ev1A	222	71.12		
2py6A	409	71.54		
2px2A	269	71.62		
1xkqA	280	72.64	c.2.1.2	115417
2graA	277	75.10		
1va0A	239	76.86	c.90.1.1	119899
1x8mA	288	79.98	b.82.1.13	109516
1yt8A	539	82.37	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1xhlA	297	83.53	c.2.1.2	109591
2qh8A	302	84.60		
2d1hA	109	84.63	a.4.5.50	131125
2oggA	152	84.87