# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	1.09e-09		
2gcxA	75	1.24e-09		
1fx7A	230	0.000258	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	0.000674		
2dtrA	226	0.002505	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.008814		
2dtr	226	0.01015		
1bymA	97	3.522	b.34.1.2	24458
1rhs	296	9.330		
1h75A	81	10.06	c.47.1.1	60716
2c81A	418	10.95		
1e0cA	271	12.87	c.46.1.2,c.46.1.2	32717,32718
1y8xB	98	13.19		
3bn1A	373	13.44		
1mdoA	393	16.93	c.67.1.4	79013
1elqA	390	17.14	c.67.1.3	34436
1rhsA	296	19.70	c.46.1.2,c.46.1.2	32703,32704
1ne2A	200	19.99	c.66.1.32	85586
1o69A	394	20.67	c.67.1.4	92560
1uarA	285	21.82	c.46.1.2,c.46.1.2	107762,107763
1eluA	390	23.49	c.67.1.3	34434
1s68A	249	34.58	d.142.2.4	98591
1z3eB	73	36.75	a.60.3.1	124401
3cnvA	162	37.92		
2px2A	269	38.59		
1z2mA	155	40.39	d.15.1.1,d.15.1.1	124387,124388
2fa1A	160	41.49	d.190.1.2	133182
1r1gA	31	41.61	g.3.7.2	96816
1a8i	842	42.20		
2nygA	273	43.52		
2pwyA	258	44.23		
2ogeA	399	44.96		
1hrkA	359	46.99	c.92.1.1	61228
2bb3A	221	47.12	c.90.1.1	128257
2vsgA	358	47.94	h.4.1.1	45780
1opdA	85	48.80	d.94.1.1	40560
1cbfA	285	50.77	c.90.1.1	35587
1b9hA	388	51.68	c.67.1.4	34488
2qh8A	302	55.25		
1pchA	88	57.53	d.94.1.1	40564
1zccA	248	59.48	c.1.18.3	124903
2yvlA	248	59.82		
1sfxA	109	61.19	a.4.5.50	105505
2qwvA	208	61.90		
1ptfA	88	61.93	d.94.1.1	40549
2pkhA	148	63.95		
2eayA	233	64.18		
1zc1A	208	64.22		
1v2yA	105	66.38	d.15.1.1	100275
1xkqA	280	68.59	c.2.1.2	115417
2graA	277	68.68		
1mo1A	87	68.86	d.94.1.1	91363
1va0A	239	70.53	c.90.1.1	119899
1yt8A	539	72.29	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2oggA	152	74.49		
1x8mA	288	75.00	b.82.1.13	109516
1y51A	88	75.85		
1wohA	305	76.34	c.42.1.1	109446
2py6A	409	76.71		
1v5tA	90	77.01	d.15.1.1	108385
1dv0A	47	78.92	a.5.2.1	16289
1vkjA	285	79.23	c.37.1.5	108666
1opd	85	80.02		
1pch	88	80.62		
1lb2B	84	83.71	a.60.3.1	77871
1wb4A	297	84.73	c.69.1.2	120827
1pbeA	394	84.87	c.3.1.2,d.16.1.2	30338,37869
2pieA	138	86.46		
1vekA	84	87.31	a.5.2.1	113636
1ydgA	211	87.41	c.23.5.8	116614
2ikkA	173	87.82		
2h1rA	299	89.91