# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	2.97e-09		
2gcxA	75	5.25e-09		
2qq9A	226	0.001402		
2dtrA	226	0.006616	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1qw1A	121	0.01327		
1fx7A	230	0.01467	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2dtr	226	0.1619		
1bymA	97	2.558	b.34.1.2	24458
1rhs	296	29.10		
1nc7A	138	45.80	b.123.1.1	85549
2qh8A	302	46.58		
1uarA	285	48.29	c.46.1.2,c.46.1.2	107762,107763
1h75A	81	56.37	c.47.1.1	60716
1rhsA	296	56.53	c.46.1.2,c.46.1.2	32703,32704
1y8xB	98	58.99		
2nsnA	95	68.12		
2jonA	101	70.25		
1y8qB	640	71.51		
1z3eB	73	72.36	a.60.3.1	124401
1zelA	298	78.99		
1aru	344	83.29		
1dv0A	47	85.31	a.5.2.1	16289
1e0cA	271	88.49	c.46.1.2,c.46.1.2	32717,32718