# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2gcxA	75	6.99e-10		
2h3jA	75	8.66e-10		
2dtrA	226	0.000925	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1fx7A	230	0.002902	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	0.003250		
1qw1A	121	0.008559		
2dtr	226	0.01712		
1bymA	97	1.154	b.34.1.2	24458
1a8i	842	4.501		
1rhs	296	4.535		
1rhsA	296	9.101	c.46.1.2,c.46.1.2	32703,32704
1e0cA	271	9.324	c.46.1.2,c.46.1.2	32717,32718
2vsgA	358	9.331	h.4.1.1	45780
1y8xB	98	17.09		
1uarA	285	21.97	c.46.1.2,c.46.1.2	107762,107763
1z2mA	155	22.97	d.15.1.1,d.15.1.1	124387,124388
1qusA	322	29.07	d.2.1.6	36991
2c81A	418	30.11		
2h1rA	299	36.33		
1xkqA	280	41.25	c.2.1.2	115417
2py6A	409	41.43		
3bn1A	373	41.51		
2gfsA	372	42.60	d.144.1.7	135109
1wc2A	181	43.51		
2z6rA	265	44.51		
1z3eB	73	45.50	a.60.3.1	124401
1h75A	81	46.02	c.47.1.1	60716
1xhlA	297	46.04	c.2.1.2	109591
2qwvA	208	46.72		
1v2yA	105	55.69	d.15.1.1	100275
1s68A	249	58.06	d.142.2.4	98591
1tl9A	339	58.85	d.3.1.3	112505
2yqzA	263	58.92		
1tl2A	236	63.10	b.67.1.1	27541
1dv0A	47	66.64	a.5.2.1	16289
1go3F	107	72.35	a.60.8.2	65407
1kafA	108	72.61	d.199.1.1	68372
1cbfA	285	77.30	c.90.1.1	35587
1y8qB	640	77.68		
3cddA	361	78.82		
2qvpA	275	78.94		
2iq1A	274	79.32		
1ne2A	200	81.77	c.66.1.32	85586
1v5tA	90	83.08	d.15.1.1	108385
1hrkA	359	83.39	c.92.1.1	61228
1va0A	239	84.36	c.90.1.1	119899
1qamA	244	85.52	c.66.1.24	34220
1zccA	248	88.97	c.1.18.3	124903
1wohA	305	89.18	c.42.1.1	109446
1kyhA	276	89.63	c.72.1.4	73222