# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gcxA 75 4.35e-05 2h3jA 75 0.000930 1fx7A 230 0.02692 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2qq9A 226 1.612 1bymA 97 1.673 b.34.1.2 24458 1dj7B 75 2.033 b.34.4.3 24598 1aboA 62 2.048 b.34.2.1 24474 1gcqA 61 2.295 b.34.2.1 60434 1w70A 60 2.464 2g6fX 59 2.913 1bbzA 58 2.980 b.34.2.1 24477 2o88A 58 3.095 1qw1A 121 3.204 3c0cA 73 3.236 2a08A 60 3.314 1zlmA 58 3.323 2ak5A 64 3.432 1tuc 63 3.545 2j6fA 62 3.871 2drmA 58 4.020 1hd3A 62 4.046 b.34.2.1 65802 1ootA 60 4.405 b.34.2.1 93386 1u06A 62 4.634 b.34.2.1 119404 1zx6A 58 4.714 2pu9B 74 4.929 1utiA 58 5.057 b.34.2.1 99962 1semA 58 6.295 b.34.2.1 24544 2a28A 54 7.054 2bz8A 58 7.116 1oebA 62 7.118 b.34.2.1 86909 1wyxA 69 7.541 1ov3A 138 7.607 b.34.2.1,b.34.2.1 87451,87452 2bzyA 67 8.341 1uj0A 62 10.95 b.34.2.1 99449 1eejA 216 11.37 c.47.1.9,d.17.3.1 33057,38071 2d1xA 66 13.33 2ooiA 162 13.57 2gncA 60 15.16 1h75A 81 15.43 c.47.1.1 60716 3bwgA 239 16.09 1j48A 110 16.49 b.1.7.1 84112 1ng2A 193 17.42 b.34.2.1,b.34.2.1 85660,85661 1pht 85 17.69 3cnvA 162 17.97 1z9zA 60 21.84 3ddyA 186 22.79 1ywpA 64 23.03 2ggrA 76 23.63 1x2kA 68 23.80 1uarA 285 24.10 c.46.1.2,c.46.1.2 107762,107763 1zuuA 58 25.79 b.34.2.1 125688 1ckaA 57 26.00 b.34.2.1 24459 2heqA 84 26.79 2j05A 65 26.86 1qcsA 211 28.66 b.52.2.3,d.31.1.1 26927,38461 2oggA 152 29.23 1phtA 85 30.83 b.34.2.1 24483 2qk0A 74 31.44 1y0mA 61 31.49 1rhs 296 32.11 2p19A 149 33.11 1v7lA 163 34.00 c.8.2.1 113562 2v1qA 60 34.35 1wlpB 138 35.38 b.34.2.1 121010 2pkhA 148 35.62 3cqtA 79 35.83 2vknA 70 37.38 1e0cA 271 37.87 c.46.1.2,c.46.1.2 32717,32718 1gcqC 70 39.04 b.34.2.1 60436 1kzlA 208 39.75 b.43.4.3,b.43.4.3 77635,77636 2qtxA 71 40.34 2gaiA 633 40.43 2de0X 526 41.03 1ug1A 92 41.49 b.34.2.1 99360 2nwiA 172 41.59 2ikkA 173 42.95 2fpeA 62 44.40 1shfA 59 45.82 b.34.2.1 24462 1yn8A 59 47.34 1q7sA 117 47.44 c.131.1.1 96055 1rhsA 296 47.63 c.46.1.2,c.46.1.2 32703,32704 1jbwA 428 48.04 c.59.1.2,c.72.2.2 62860,62861 1i8dA 213 48.79 b.43.4.3,b.43.4.3 61953,61954 2o31A 67 49.06 1noaA 113 49.84 b.1.7.1 22208 1jb0E 75 51.73 b.34.4.2 62824 1jo8A 58 51.84 b.34.2.1 71774 1wn2A 121 52.00 2egvA 229 53.08 2iimA 62 53.84 b.34.2.1 137434 2jngA 105 54.83 1z85A 234 59.34 2v1rA 80 59.99 2nysA 176 60.09 1nxzA 246 61.29 b.122.1.2,c.116.1.5 86391,86392 2fa1A 160 65.64 d.190.1.2 133182 2yxyA 115 66.95 2id1A 130 67.16 2ostA 151 70.01 1o6aA 96 71.06 b.139.1.1 92562 1ruwA 69 71.92 3cnqP 80 72.55 1wu2A 396 75.18 b.85.6.1,b.103.1.1,c.57.1.2 114884,114885,114886 2hzcA 87 77.58 2ckkA 127 82.25 1suuA 312 83.59 b.68.10.1 99006 1vhyA 257 85.25 b.122.1.2,c.116.1.5 100714,100715 2dtr 226 85.91 1cskA 71 87.97 b.34.2.1 24513 1k3yA 221 89.66 a.45.1.1,c.47.1.5 77245,77246