This file specifies which residues will be varied Column 2: Chain Column 4-7: sequential residue number Column 9-12: pdb residue number Column 14-18: id (described below) Column 21-40: amino acids to be used NATAA => use native amino acid ALLAA => all amino acids NATRO => native amino acid and rotamer PIKAA => select inividual amino acids POLAR => polar amino acids APOLA => apolar amino acids The following demo lines are in the proper format A 1 3 NATAA A 2 4 ALLAA A 3 6 NATRO A 4 7 NATAA B 5 1 PIKAA DFLM B 6 2 PIKAA HIL B 7 3 POLAR ------------------------------------------------- start A 1 1 NATAA M A 2 2 NATAA K A 3 3 NATAA L A 4 4 NATAA S A 5 5 NATAA R A 6 6 NATAA L A 7 7 NATAA V A 8 8 NATRO P A 9 9 NATAA G A 10 10 NATAA V A 11 11 NATRO P A 12 12 NATAA A A 13 13 NATAA R A 14 14 NATAA I A 15 15 NATAA K A 16 16 NATAA R A 17 17 NATAA L A 18 18 NATAA E A 19 19 NATAA V A 20 20 NATAA S A 21 21 NATAA G A 22 22 NATAA E A 23 23 NATAA L A 24 24 NATAA H A 25 25 NATAA E A 26 26 NATAA K A 27 27 NATAA L A 28 28 NATAA V A 29 29 NATAA G A 30 30 NATAA M A 31 31 NATAA G A 32 32 NATAA F A 33 33 NATAA V A 34 34 NATRO P A 35 35 NATAA G A 36 36 NATAA E A 37 37 NATAA E A 38 38 NATAA I A 39 39 NATAA E A 40 40 NATAA I A 41 41 NATAA V A 42 42 NATAA Q A 43 43 NATAA V A 44 44 NATAA A A 45 45 NATRO P A 46 46 NATAA L A 47 47 NATAA G A 48 48 NATAA D A 49 49 NATRO P A 50 50 NATAA I A 51 51 NATAA V A 52 52 NATRO C A 53 53 NATAA K A 54 54 NATAA I A 55 55 NATAA G A 56 56 NATAA N A 57 57 NATAA R A 58 58 NATAA N A 59 59 NATAA I A 60 60 NATAA T A 61 61 NATAA L A 62 62 NATAA R A 63 63 NATAA K A 64 64 NATAA R A 65 65 NATAA E A 66 66 NATAA A A 67 67 NATAA D A 68 68 NATAA L A 69 69 NATAA I A 70 70 NATAA E A 71 71 NATAA V A 72 72 NATAA E A 73 73 NATAA V A 74 74 NATAA V A 75 75 NATAA G