# TARGET TR462 # Using neural net dunbrack-40pc-3157-t2k-IDGaaH13-3-13-7-13-9-13-11-pb-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 16 (1 pb ) # The input amino acid frequencies were determined from # alignment TR462.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 4.77549 # Pos AA A B C D E F G H I J K L M N O P 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 E 0.039 0.311 0.202 0.317 0.001 0.009 0.008 0.001 0.019 0.001 0.003 0.011 0.013 0.001 0.003 0.063 2 L 0.033 0.008 0.440 0.471 0.001 0.019 0.011 0.001 0.001 0.001 0.002 0.001 0.008 0.001 0.001 0.003 3 P 0.008 0.048 0.262 0.601 0.003 0.064 0.001 0.003 0.001 0.001 0.002 0.001 0.004 0.001 0.001 0.002 4 L 0.003 0.007 0.011 0.955 0.005 0.007 0.001 0.001 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 5 I 0.003 0.016 0.031 0.921 0.003 0.014 0.001 0.002 0.001 0.001 0.001 0.006 0.001 0.001 0.001 0.001 6 L 0.002 0.024 0.035 0.826 0.032 0.057 0.002 0.007 0.003 0.002 0.003 0.001 0.003 0.001 0.001 0.003 7 A 0.004 0.021 0.012 0.161 0.099 0.653 0.005 0.012 0.004 0.002 0.016 0.003 0.006 0.001 0.001 0.001 8 D 0.003 0.097 0.006 0.028 0.339 0.057 0.061 0.046 0.002 0.005 0.313 0.010 0.003 0.030 0.001 0.001 9 D 0.006 0.285 0.016 0.080 0.003 0.007 0.003 0.324 0.052 0.003 0.009 0.038 0.001 0.001 0.171 0.003 10 G 0.018 0.013 0.133 0.083 0.001 0.015 0.010 0.001 0.307 0.113 0.008 0.007 0.008 0.001 0.002 0.280 11 T 0.701 0.041 0.144 0.100 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.004 12 Y 0.011 0.014 0.446 0.477 0.003 0.035 0.001 0.001 0.004 0.001 0.002 0.003 0.002 0.001 0.001 0.001 13 E 0.003 0.034 0.046 0.907 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 I 0.001 0.003 0.019 0.632 0.053 0.279 0.001 0.002 0.001 0.001 0.006 0.002 0.002 0.001 0.001 0.001 15 T 0.001 0.185 0.008 0.770 0.004 0.006 0.001 0.013 0.001 0.001 0.006 0.004 0.001 0.001 0.001 0.001 16 K 0.001 0.009 0.007 0.828 0.028 0.090 0.003 0.003 0.009 0.006 0.003 0.005 0.006 0.001 0.001 0.002 17 L 0.010 0.011 0.043 0.084 0.656 0.052 0.032 0.025 0.002 0.003 0.051 0.006 0.016 0.007 0.001 0.001 18 N 0.001 0.030 0.006 0.071 0.212 0.083 0.026 0.426 0.007 0.016 0.040 0.032 0.014 0.021 0.015 0.001 19 G 0.005 0.025 0.005 0.036 0.013 0.061 0.004 0.200 0.114 0.179 0.144 0.069 0.057 0.001 0.060 0.027 20 G 0.051 0.008 0.011 0.011 0.006 0.037 0.005 0.004 0.068 0.129 0.155 0.222 0.235 0.003 0.003 0.051 21 R 0.069 0.018 0.024 0.009 0.001 0.021 0.002 0.005 0.001 0.002 0.160 0.294 0.384 0.001 0.006 0.005 22 R 0.001 0.011 0.013 0.005 0.001 0.032 0.001 0.001 0.001 0.001 0.052 0.383 0.495 0.001 0.001 0.003 23 F 0.001 0.002 0.002 0.003 0.001 0.003 0.001 0.001 0.001 0.001 0.022 0.034 0.933 0.001 0.001 0.001 24 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.025 0.968 0.001 0.001 0.001 25 F 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.006 0.988 0.001 0.001 0.001 26 R 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.989 0.001 0.001 0.004 27 M 0.001 0.001 0.003 0.001 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.968 0.014 0.001 0.001 28 K 0.001 0.003 0.004 0.002 0.001 0.002 0.002 0.003 0.001 0.001 0.002 0.006 0.935 0.005 0.030 0.006 29 N 0.001 0.002 0.002 0.002 0.004 0.001 0.031 0.001 0.001 0.002 0.002 0.003 0.094 0.800 0.002 0.053 30 L 0.011 0.003 0.032 0.004 0.001 0.001 0.002 0.009 0.001 0.001 0.001 0.001 0.051 0.001 0.877 0.007 31 G 0.005 0.010 0.130 0.019 0.001 0.006 0.015 0.001 0.014 0.016 0.001 0.002 0.042 0.004 0.002 0.732 32 I 0.762 0.010 0.084 0.053 0.014 0.016 0.006 0.003 0.001 0.001 0.008 0.002 0.028 0.002 0.004 0.007 33 E 0.001 0.027 0.101 0.054 0.516 0.037 0.090 0.011 0.001 0.002 0.011 0.008 0.006 0.131 0.001 0.002 34 S 0.010 0.158 0.024 0.223 0.003 0.037 0.003 0.397 0.008 0.002 0.009 0.004 0.006 0.001 0.112 0.005 35 G 0.009 0.025 0.034 0.138 0.008 0.034 0.005 0.001 0.437 0.180 0.016 0.007 0.007 0.001 0.001 0.097 36 K 0.647 0.063 0.043 0.230 0.001 0.002 0.001 0.002 0.001 0.001 0.002 0.006 0.001 0.001 0.001 0.001 37 K 0.003 0.037 0.547 0.386 0.001 0.015 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.002 38 I 0.006 0.004 0.092 0.889 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 39 Q 0.001 0.009 0.034 0.910 0.025 0.016 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 40 V 0.001 0.002 0.002 0.190 0.783 0.015 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 41 S 0.001 0.043 0.003 0.169 0.020 0.040 0.001 0.713 0.003 0.001 0.002 0.001 0.001 0.001 0.004 0.001 42 G 0.002 0.041 0.003 0.127 0.035 0.056 0.003 0.016 0.408 0.263 0.026 0.003 0.001 0.001 0.001 0.014 43 R 0.430 0.169 0.041 0.249 0.002 0.012 0.001 0.030 0.028 0.006 0.011 0.013 0.001 0.001 0.003 0.004 44 R 0.015 0.107 0.421 0.404 0.001 0.008 0.002 0.001 0.024 0.004 0.001 0.002 0.001 0.001 0.001 0.011 45 Y 0.031 0.004 0.259 0.685 0.005 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 46 Y 0.003 0.018 0.095 0.720 0.137 0.021 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 47 I 0.001 0.002 0.001 0.112 0.839 0.027 0.006 0.007 0.001 0.001 0.002 0.001 0.001 0.002 0.001 0.001 48 E 0.001 0.018 0.001 0.016 0.012 0.051 0.001 0.892 0.002 0.001 0.002 0.001 0.001 0.001 0.004 0.001 49 G 0.001 0.022 0.001 0.024 0.002 0.008 0.001 0.011 0.719 0.154 0.036 0.004 0.001 0.001 0.001 0.016 50 R 0.728 0.044 0.045 0.078 0.001 0.005 0.001 0.004 0.030 0.007 0.005 0.045 0.002 0.001 0.001 0.007 51 E 0.044 0.037 0.762 0.118 0.001 0.015 0.002 0.001 0.005 0.001 0.002 0.003 0.002 0.001 0.001 0.008 52 I 0.012 0.017 0.408 0.501 0.010 0.037 0.001 0.002 0.001 0.001 0.003 0.002 0.005 0.001 0.001 0.001 53 D 0.001 0.019 0.021 0.325 0.436 0.153 0.010 0.008 0.001 0.002 0.005 0.005 0.003 0.009 0.001 0.001 54 L 0.004 0.064 0.007 0.448 0.100 0.032 0.004 0.230 0.007 0.002 0.079 0.005 0.005 0.001 0.012 0.001 55 G 0.001 0.013 0.006 0.061 0.531 0.056 0.072 0.020 0.041 0.112 0.020 0.034 0.005 0.021 0.001 0.006 56 Y 0.112 0.055 0.027 0.064 0.009 0.023 0.009 0.509 0.015 0.006 0.048 0.011 0.015 0.001 0.092 0.005 57 G 0.007 0.016 0.037 0.040 0.005 0.047 0.003 0.007 0.418 0.245 0.045 0.056 0.018 0.001 0.002 0.052 58 E 0.598 0.066 0.076 0.118 0.001 0.012 0.001 0.003 0.005 0.003 0.026 0.059 0.020 0.001 0.002 0.011 59 A 0.020 0.038 0.306 0.227 0.006 0.238 0.004 0.002 0.004 0.002 0.020 0.079 0.046 0.002 0.001 0.003 60 T 0.006 0.386 0.097 0.470 0.001 0.006 0.001 0.001 0.001 0.001 0.004 0.004 0.018 0.001 0.001 0.005 61 K 0.003 0.007 0.072 0.901 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.002 0.005 0.001 0.001 0.003 62 I 0.005 0.002 0.435 0.531 0.004 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.001 0.001 0.001 63 W 0.001 0.009 0.007 0.973 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 64 V 0.001 0.016 0.006 0.845 0.016 0.100 0.001 0.001 0.001 0.001 0.002 0.002 0.009 0.001 0.001 0.001 65 R 0.003 0.137 0.023 0.763 0.004 0.025 0.001 0.012 0.001 0.001 0.008 0.002 0.016 0.001 0.001 0.002 66 R 0.005 0.032 0.042 0.517 0.098 0.212 0.015 0.006 0.012 0.010 0.010 0.013 0.015 0.007 0.001 0.007 67 V 0.031 0.064 0.077 0.368 0.100 0.084 0.024 0.067 0.004 0.003 0.111 0.016 0.027 0.006 0.015 0.003