# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1bi0	226	4.648		
2dtr	226	5.247		
1qw1A	121	5.495		
1fx7A	230	7.051	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2h3jA	75	7.242		
1pdo	135	12.76		
2cftA	298	13.25		
1j77A	209	14.82	a.132.1.2	62674
1ryjA	70	15.10	d.15.3.2	98104
2gcxA	75	15.79		
2dt4A	143	17.84		
1uekA	275	21.65	d.14.1.5,d.58.26.5	88483,88484
2ooiA	162	22.99		
1bymA	97	24.61	b.34.1.2	24458
2oq0A	206	25.43		
2avxA	171	26.43		
1npyA	271	27.01	c.2.1.7,c.58.1.5	85995,85996
2gcoA	201	27.28		
1pdoA	135	27.42	c.54.1.1	33376
1c8uA	285	29.53	d.38.1.3,d.38.1.3	38547,38548
3bedA	142	29.82		
2bitX	165	32.04	b.62.1.1	128590
2feaA	236	33.90	c.108.1.20	133327
2glwA	92	33.92		
1fgs	428	38.58		
1wgvA	124	39.43	b.15.1.4	114624
2oggA	152	40.25		
1zd0A	150	40.69	d.329.1.1	124927
1kmqA	184	41.18	c.37.1.8	84412
1ptmA	329	42.64	c.77.1.3	95104
2vptA	215	43.29		
2iacA	142	43.74		
2p4gA	270	45.70		
2fkiA	126	46.47	d.198.3.1	133657
2ogeA	399	51.95		
2akoA	251	52.97	c.73.1.3	126923
1vi2A	300	54.06	c.2.1.7,c.58.1.5	100726,100727
1yndA	165	56.85	b.62.1.1	123721
1h9mA	145	57.49	b.40.6.2,b.40.6.2	60833,60834
2qq9A	226	57.75		
2z6wA	165	57.82		
2q0oA	236	59.30		
1a3c	181	60.43		
1b7bA	310	64.80	c.73.1.1	34963
1sk7A	198	66.19	a.132.1.2	105671
1e19A	314	67.92	c.73.1.1	34967
2e4uA	555	68.04		
2f5tX	233	72.70		
2r99A	173	73.28		
2nygA	273	75.44		
2b71A	196	76.49	b.62.1.1	128004
1x1mA	107	76.72	d.15.1.1	121592
2gw2A	198	79.66		
1tjlA	151	80.49	a.2.14.1,g.39.1.13	107027,107028
2iu4A	336	81.48		
1awsA	164	82.23	b.62.1.1	27431
2ogxA	276	82.82		
2cmtA	172	83.30		
2j0vA	212	84.34		
1x38A	602	85.41	c.1.8.7,c.23.11.1	121655,121656
1y51A	88	85.62		
3cnvA	162	88.32