# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2dtr	226	2.637		
1bi0	226	4.574		
1ryjA	70	4.980	d.15.3.2	98104
1fx7A	230	7.475	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2cftA	298	7.522		
2h3jA	75	8.896		
1qw1A	121	13.33		
1uekA	275	13.45	d.14.1.5,d.58.26.5	88483,88484
2ooiA	162	16.36		
1pdo	135	16.67		
2gcxA	75	18.66		
2glwA	92	19.28		
2avxA	171	22.92		
1j77A	209	22.94	a.132.1.2	62674
1vi2A	300	26.94	c.2.1.7,c.58.1.5	100726,100727
1npyA	271	26.99	c.2.1.7,c.58.1.5	85995,85996
1pdoA	135	27.10	c.54.1.1	33376
2pe3A	354	30.30		
2q0oA	236	31.28		
1h72C	296	31.45	d.14.1.5,d.58.26.1	60712,60713
1h9mA	145	32.16	b.40.6.2,b.40.6.2	60833,60834
2bitX	165	32.84	b.62.1.1	128590
2oggA	152	33.34		
1fwkA	296	35.53	d.14.1.5,d.58.26.1	37576,39398
1bymA	97	35.65	b.34.1.2	24458
1a5cA	368	38.80	c.1.10.1	29148
2pkhA	148	40.71		
3cnvA	162	40.88		
1fbaA	361	43.32	c.1.10.1	29120
2fkiA	126	43.96	d.198.3.1	133657
1epxA	370	43.98	c.1.10.1	29150
2dt4A	143	46.72		
1y88A	199	46.90	a.60.4.3,c.52.1.30	116560,116561
2iqtA	296	50.66		
2iacA	142	53.72		
3bedA	142	56.51		
2ogeA	399	57.07		
2ejwA	332	57.99		
2z6wA	165	61.98		
2p4gA	270	62.20		
1adoA	363	62.35	c.1.10.1	29124
1yndA	165	64.49	b.62.1.1	123721
2nygA	273	65.17		
1ptmA	329	65.64	c.77.1.3	95104
1c8uA	285	66.68	d.38.1.3,d.38.1.3	38547,38548
2feaA	236	67.95	c.108.1.20	133327
1e79D	482	69.43	a.69.1.1,b.49.1.1,c.37.1.11	18272,26437,32317
2fr1A	486	69.58	c.2.1.2,c.2.1.2	133961,133962
1pchA	88	71.59	d.94.1.1	40564
2r99A	173	77.32		
2p36A	335	80.17		
1x1mA	107	82.35	d.15.1.1	121592
3bv4A	341	82.97		
1zaiA	363	83.22	c.1.10.1	124828
1y51A	88	83.60		
1wgvA	124	83.72	b.15.1.4	114624
2gcoA	201	83.84		
1opdA	85	84.71	d.94.1.1	40560
2cmtA	172	86.17		
2cfeA	162	87.26	b.62.1.1	130375
2p19A	149	87.54