# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2dtr	226	4.094		
1bi0	226	4.948		
2h3jA	75	5.108		
1fx7A	230	5.511	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
1qw1A	121	7.124		
2cftA	298	8.794		
1ryjA	70	11.96	d.15.3.2	98104
2gcxA	75	12.10		
2dt4A	143	13.38		
2glwA	92	15.19		
1pdo	135	16.21		
2ooiA	162	18.87		
1c8uA	285	19.22	d.38.1.3,d.38.1.3	38547,38548
2avxA	171	19.32		
1bymA	97	21.19	b.34.1.2	24458
2bitX	165	22.68	b.62.1.1	128590
1uekA	275	22.98	d.14.1.5,d.58.26.5	88483,88484
1j77A	209	25.98	a.132.1.2	62674
1pdoA	135	30.03	c.54.1.1	33376
2fkiA	126	30.83	d.198.3.1	133657
2q0oA	236	30.85		
2oggA	152	32.33		
1npyA	271	32.54	c.2.1.7,c.58.1.5	85995,85996
1yndA	165	35.59	b.62.1.1	123721
1h9mA	145	36.80	b.40.6.2,b.40.6.2	60833,60834
1vi2A	300	37.35	c.2.1.7,c.58.1.5	100726,100727
2e4uA	555	39.56		
2vptA	215	45.97		
3cnvA	162	47.03		
2z6wA	165	48.61		
2pe3A	354	49.40		
2gcoA	201	50.35		
2cfeA	162	50.55	b.62.1.1	130375
2r99A	173	51.44		
2iqtA	296	53.99		
1epxA	370	57.18	c.1.10.1	29150
2cmtA	172	57.36		
1h72C	296	58.36	d.14.1.5,d.58.26.1	60712,60713
3bedA	142	58.68		
2q78A	153	59.33		
2ce2X	166	59.52		
2oq0A	206	60.60		
2iu4A	336	62.15		
1a5cA	368	65.48	c.1.10.1	29148
1fwkA	296	65.60	d.14.1.5,d.58.26.1	37576,39398
2pjhB	193	65.74		
1awsA	164	65.80	b.62.1.1	27431
2feaA	236	66.40	c.108.1.20	133327
2iacA	142	67.49		
1fbaA	361	67.71	c.1.10.1	29120
2akoA	251	68.30	c.73.1.3	126923
1wgvA	124	70.36	b.15.1.4	114624
1cz4A	185	74.29	b.52.2.3,d.31.1.1	26934,38468
1fgs	428	74.92		
1hdiA	413	75.81	c.86.1.1	60964
3butA	136	77.27		
2nygA	273	79.16		
1pchA	88	79.98	d.94.1.1	40564
2pkhA	148	80.07		
2p4gA	270	80.34		
2poyA	186	81.64		
2qq9A	226	82.15		
1tbuA	118	86.45	d.38.1.3	119223
1vdnA	162	86.53	b.62.1.1	120006
1opdA	85	87.51	d.94.1.1	40560
2b71A	196	88.48	b.62.1.1	128004
1adoA	363	88.61	c.1.10.1	29124
1kmqA	184	88.90	c.37.1.8	84412
1h9sA	140	88.95	b.40.6.2,b.40.6.2	60843,60844
1xwnA	174	89.39	b.62.1.1	122404