# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	5.319		
2dtr	226	6.635		
1ryjA	70	7.023	d.15.3.2	98104
1qw1A	121	9.073		
2gcxA	75	10.55		
1bymA	97	11.03	b.34.1.2	24458
1pdo	135	12.88		
1fx7A	230	13.38	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
1bi0	226	13.40		
2cftA	298	14.13		
2avxA	171	15.92		
2dt4A	143	17.15		
2glwA	92	19.28		
1pdoA	135	19.47	c.54.1.1	33376
1ptmA	329	24.59	c.77.1.3	95104
2ooiA	162	24.63		
1uekA	275	28.04	d.14.1.5,d.58.26.5	88483,88484
1j77A	209	29.33	a.132.1.2	62674
2oggA	152	34.47		
2feaA	236	35.53	c.108.1.20	133327
2bitX	165	35.77	b.62.1.1	128590
3bedA	142	44.79		
2oq0A	206	45.14		
1c8uA	285	46.05	d.38.1.3,d.38.1.3	38547,38548
1wgvA	124	46.23	b.15.1.4	114624
1yndA	165	47.57	b.62.1.1	123721
2fkiA	126	50.97	d.198.3.1	133657
1x38A	602	52.50	c.1.8.7,c.23.11.1	121655,121656
1xwnA	174	53.63	b.62.1.1	122404
1i7qB	193	54.30	c.23.16.1	61902
1npyA	271	55.62	c.2.1.7,c.58.1.5	85995,85996
3cnvA	162	58.19		
2gcoA	201	59.34		
2e4uA	555	62.54		
1zd0A	150	63.11	d.329.1.1	124927
1h72C	296	63.42	d.14.1.5,d.58.26.1	60712,60713
2iacA	142	64.29		
2vptA	215	64.74		
2q0oA	236	66.50		
1awsA	164	67.70	b.62.1.1	27431
2fr1A	486	68.12	c.2.1.2,c.2.1.2	133961,133962
2ojwA	384	68.25		
2qq9A	226	70.36		
2iu4A	336	71.42		
1h9mA	145	72.82	b.40.6.2,b.40.6.2	60833,60834
2cmtA	172	73.52		
2b71A	196	73.90	b.62.1.1	128004
2q78A	153	74.11		
1x1mA	107	75.17	d.15.1.1	121592
2rdkA	109	77.50		
2hi1A	330	77.66		
2pkhA	148	80.01		
1a3c	181	80.82		
2z6wA	165	81.28		
1cz4A	185	83.80	b.52.2.3,d.31.1.1	26934,38468
2p4gA	270	86.72