# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2dtr	226	2.476		
1qw1A	121	3.801		
2h3jA	75	4.235		
1bi0	226	5.137		
2gcxA	75	7.971		
1fx7A	230	8.546	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2cftA	298	9.511		
2oq0A	206	10.46		
1pdoA	135	15.37	c.54.1.1	33376
2ooiA	162	17.41		
1ryjA	70	17.81	d.15.3.2	98104
2avxA	171	18.22		
1pdo	135	18.54		
1bymA	97	18.72	b.34.1.2	24458
2glwA	92	20.62		
1uekA	275	22.54	d.14.1.5,d.58.26.5	88483,88484
1h72C	296	27.45	d.14.1.5,d.58.26.1	60712,60713
1j77A	209	30.38	a.132.1.2	62674
2fkiA	126	31.32	d.198.3.1	133657
3bedA	142	31.93		
2gcoA	201	33.06		
1npyA	271	33.98	c.2.1.7,c.58.1.5	85995,85996
2dt4A	143	34.68		
1vi2A	300	39.26	c.2.1.7,c.58.1.5	100726,100727
1cz4A	185	39.82	b.52.2.3,d.31.1.1	26934,38468
1kmqA	184	40.87	c.37.1.8	84412
2fr1A	486	43.61	c.2.1.2,c.2.1.2	133961,133962
2iqtA	296	43.78		
2feaA	236	43.86	c.108.1.20	133327
1fwkA	296	44.39	d.14.1.5,d.58.26.1	37576,39398
3cnvA	162	44.89		
2iacA	142	45.46		
2bitX	165	46.03	b.62.1.1	128590
1pchA	88	47.70	d.94.1.1	40564
1yndA	165	47.90	b.62.1.1	123721
1c8uA	285	47.99	d.38.1.3,d.38.1.3	38547,38548
2q0oA	236	48.40		
1a3c	181	48.64		
1hdiA	413	49.79	c.86.1.1	60964
1x1mA	107	50.66	d.15.1.1	121592
1wgvA	124	50.95	b.15.1.4	114624
2oggA	152	51.02		
1xwnA	174	51.79	b.62.1.1	122404
2g8jA	339	52.16	d.3.1.3	134773
3butA	136	52.49		
2nygA	273	52.60		
2pkhA	148	52.91		
2p36A	335	53.93		
1opdA	85	54.29	d.94.1.1	40560
2vptA	215	54.79		
1h9mA	145	54.83	b.40.6.2,b.40.6.2	60833,60834
1y51A	88	60.04		
2f5tX	233	60.32		
2q78A	153	60.60		
1ptfA	88	62.17	d.94.1.1	40549
2z6wA	165	63.89		
2uyzB	79	64.98	d.15.1.1	140039
2akoA	251	66.09	c.73.1.3	126923
1opd	85	66.52		
2r98A	456	66.70		
2r99A	173	69.48		
2pjhB	193	69.76		
1awsA	164	70.83	b.62.1.1	27431
2cmtA	172	70.88		
2cfeA	162	71.35	b.62.1.1	130375
1kxrA	339	77.73	d.3.1.3	73175
1ptmA	329	78.56	c.77.1.3	95104
1x38A	602	82.96	c.1.8.7,c.23.11.1	121655,121656
6rlxB	28	85.88	g.1.1.1	43988
1i7qB	193	86.95	c.23.16.1	61902
2eayA	233	87.07		
2pe3A	354	87.54		
1pch	88	89.37