# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2dtr	226	1.115		
1qw1A	121	1.264		
2azjA	289	1.578		
1bi0	226	1.859		
1fx7A	230	3.492	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
1bymA	97	4.818	b.34.1.2	24458
1wmwA	330	5.877		
1zd0A	150	9.559	d.329.1.1	124927
2h3jA	75	9.607		
1uby	367	14.12		
1zzmA	259	15.68	c.1.9.12	125911
1rqjA	299	16.08	a.128.1.1	97744
2gcxA	75	18.31		
2gcoA	201	23.47		
2bitX	165	24.68	b.62.1.1	128590
1wgvA	124	26.10	b.15.1.4	114624
2j1oA	268	26.90		
2cmtA	172	27.81		
1y51A	88	28.00		
1wy0A	342	28.48		
1yndA	165	29.42	b.62.1.1	123721
1yv5A	374	30.43		
2f94F	350	32.40		
2z6wA	165	37.94		
1im3D	95	38.59	b.1.18.5	62568
1yhlA	362	41.94		
1ptfA	88	43.70	d.94.1.1	40549
2r99A	173	43.94		
2avxA	171	47.00		
2cfeA	162	47.02	b.62.1.1	130375
1pchA	88	47.17	d.94.1.1	40564
2b71A	196	48.65	b.62.1.1	128004
1vdnA	162	49.22	b.62.1.1	120006
1h30A	422	50.26	b.29.1.4,b.29.1.4	76604,76605
1opdA	85	51.49	d.94.1.1	40560
2cftA	298	52.97		
2r98A	456	54.61		
2poyA	186	54.70		
2ooiA	162	56.15		
1ptmA	329	56.66	c.77.1.3	95104
2j1pA	293	58.22		
1awsA	164	59.98	b.62.1.1	27431
3c8nA	356	63.52		
1kmqA	184	68.19	c.37.1.8	84412
1j77A	209	70.39	a.132.1.2	62674
2glwA	92	70.88		
2herA	368	71.93		
1h9mA	145	73.54	b.40.6.2,b.40.6.2	60833,60834
2rdkA	109	73.88		
1i0hA	205	77.61	a.2.11.1,d.44.1.1	15760,38685
1iicA	422	77.78	d.108.1.2,d.108.1.2	62422,62423
1rtrA	301	78.30	a.128.1.1	97820
2feaA	236	79.13	c.108.1.20	133327
2e8vA	340	80.24		
2oggA	152	80.45		
2gw2A	198	80.95		
2g8jA	339	81.83	d.3.1.3	134773
1wggA	96	84.05	d.15.1.1	114612
2hpaA	342	87.55	c.60.1.2	33985
1opd	85	87.59		
1h72C	296	88.08	d.14.1.5,d.58.26.1	60712,60713