# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 1.001 1fx7A 230 1.536 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1bi0 226 3.053 1z85A 234 4.059 2gcxA 75 5.290 2acaA 189 7.835 d.63.1.2 126545 1vhsA 175 8.154 d.108.1.1 100698 2fjtA 182 8.566 1h0hA 977 10.21 b.52.2.2,c.81.1.1 76435,76436 2pwyA 258 10.31 1yqzA 438 13.94 1bymA 97 16.80 b.34.1.2 24458 2pn0A 141 17.71 1v7lA 163 19.31 c.8.2.1 113562 1vkbA 161 20.41 d.269.1.1 108643 1h9mA 145 20.97 b.40.6.2,b.40.6.2 60833,60834 3bfmA 235 21.22 1qw1A 121 23.13 1js8A 394 27.23 a.86.1.1,b.112.1.1 67219,67220 2egvA 229 28.19 2he4A 90 28.45 2pliA 91 30.06 2pbtA 134 30.87 2vi7A 177 31.81 1vcdA 126 31.97 d.113.1.1 119970 1ryjA 70 34.01 d.15.3.2 98104 1kqfA 1015 34.03 b.52.2.2,c.81.1.1 72871,72872 2zbvA 263 34.23 1uasA 362 34.31 b.71.1.1,c.1.8.1 88388,88389 1gesA 450 34.37 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 2ej9A 237 35.35 1h9sA 140 35.86 b.40.6.2,b.40.6.2 60843,60844 2pkhA 148 36.30 2covD 104 37.42 2e7zA 727 37.67 2q6kA 283 40.14 2gqwA 408 41.57 1quvA 578 41.58 e.8.1.4 43119 1g8kA 825 41.74 b.52.2.2,c.81.1.1 26920,35328 1s48A 609 41.82 e.8.1.4 98475 1aw8B 91 42.20 1z9fA 153 42.80 1lplA 95 43.36 b.34.10.1 74173 1xjo 284 44.01 1npyA 271 44.34 c.2.1.7,c.58.1.5 85995,85996 2r9zA 463 45.22 1yvcA 70 46.35 b.40.4.12 124094 2ivfA 976 46.80 3grs 478 47.96 1k8rB 110 48.69 d.15.1.5 72180 1wlfA 179 48.90 d.31.1.1,b.52.2.3 109396,109397 2j8mA 172 48.98 1d7yA 408 50.52 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 1b9mA 265 51.38 a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 2ae6A 166 52.13 d.108.1.1 126600 2ooiA 162 55.26 1pqhA 143 55.75 b.52.2.1 95017 1uch 230 57.45 3pyp 125 57.69 1x8mA 288 58.23 b.82.1.13 109516 1j77A 209 58.35 a.132.1.2 62674 2qg8A 163 59.05 1nwzA 125 59.33 d.110.3.1 86370 3bwlA 126 59.73 1ktbA 405 60.26 b.71.1.1,c.1.8.1 72960,72961 1j5wA 298 60.30 d.104.1.1 71589 1vz0A 230 60.32 a.4.14.1,d.268.1.1 108929,108930 2dc4A 165 62.10 2oaiA 94 64.65 1zruA 264 64.66 b.21.1.3,b.108.1.4,b.163.1.2 125560,125561,125562 1uheA 97 64.79 2ougA 162 65.25 1qq9A 284 66.65 c.56.5.4 33841 1nekA 588 67.06 a.7.3.1,c.3.1.4,d.168.1.1 80426,80427,80428 1g60A 260 67.15 c.66.1.11 70151 2r76A 152 67.88 1xdzA 240 70.41 c.66.1.20 115196 1n13B 113 70.73 1zylA 328 71.78 2bjiA 277 72.92 1rcqA 357 73.27 b.49.2.2,c.1.6.1 104882,104883 2hljA 157 74.34 d.38.1.1 136570 1vr4A 103 75.36 d.230.5.1 120432 1w78A 422 75.96 1xfcA 384 76.66 1yemA 179 77.66 d.63.1.2 116646 1f9zA 135 80.74 d.32.1.1 38484 1va0A 239 84.46 c.90.1.1 119899 1rqpA 299 85.08 b.141.1.1,c.132.1.1 97754,97755 1musA 477 86.20 c.55.3.4 79494 1fc6A 388 86.90 b.36.1.3,c.14.1.2 64738,64739 1jnyA 435 89.12 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1g8jA 825 89.39 b.52.2.2,c.81.1.1 26924,35332