a2m2html output for tmp.a2m

Citations (SAM, SAM-T99, HMMs)

R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting remote protein homologies, Bioinformatics 14(10):846-856, 1998.
A. Krogh et al., Hidden Markov models in computational biology: Applications to protein modeling, JMB 235:1501-1531, Feb 1994.

Sequence numbers correspond to the following labels:

- TR462
- gi|15642825|ref|NP_227866.1|_77:143 iron(II) transport protein A [Thermotoga maritima MSB8]
- gi|148270009|ref|YP_001244469.1| FeoA family protein [Thermotoga petrophila RKU-1]
- gi|4980536|gb|AAD35144.1|AE001692_1 iron(II) transport protein A [Thermotoga maritima MSB8]
- gi|147735553|gb|ABQ46893.1| FeoA family protein [Thermotoga petrophila RKU-1]
- gi|170288693|ref|YP_001738931.1|_77:143 FeoA family protein [Thermotoga sp. RQ2]
- gi|170176196|gb|ACB09248.1| FeoA family protein [Thermotoga sp. RQ2]

                 10        20        30        40        50        60  
                 |         |         |         |         |         |  
   1 ...ELPLILADDGTYEITKLNGGRRFLFRMKNLGIESGKKIQVSGRRYYIEGREIDLGYGEATKI
   2 vggELPLILADDGTYEITKLNGGRRFLFRMKNLGIESGKKIQVSGRRYYIEGREIDLGYGEATKI
   3 vggELPLILADDGTYEITKLNGGRRFLFRMKNLGIESGKKIQVSGRRYYIEGREIDLGYGEATKI


              
             
   1 WVRRV...
   2 WVRRVsda
   3 WVRRVsda